def bind_metadata(self):
return WorkflowMetadata(
contributors=["Michael Franklin", "Jiaan Yu"],
dateCreated=datetime(2019, 6, 12),
dateUpdated=datetime(2020, 7, 14),
documentation="",
)
def bind_metadata(self):
return WorkflowMetadata(
version="v0.1.0",
contributors=["Jiaan Yu"],
dateCreated=datetime(2020, 6, 4),
dateUpdated=datetime(2020, 8, 10),
)
def bind_metadata(self):
return WorkflowMetadata(
version="v0.1.0",
contributors=["Jiaan Yu"],
dateCreated=date(2021, 2, 25),
dateUpdated=date(2021, 2, 25),
)
def bind_metadata(self):
return WorkflowMetadata(
contributors=["Jiaan Yu", "Michael Franklin"],
dateCreated=datetime(2019, 3, 28),
dateUpdated=datetime(2021, 5, 27),
documentation="",
)
def bind_metadata(self):
return WorkflowMetadata(
contributors=["Michael Franklin"],
dateCreated=datetime(2020, 9, 24),
dateUpdated=datetime(2020, 10, 7),
documentation="",
)
def bind_metadata(self):
from datetime import date
return WorkflowMetadata(
contributors=["Miriam M Yeung"],
dateCreated=date(2021, 11, 10),
dateUpdated=date(2021, 11, 10),
documentation="",
)
def bind_metadata(self):
return WorkflowMetadata(
institution="Oshlack and Peter MacCallum Cancer Centre",
dateCreated=datetime(2020, 1, 1),
contributors=[
# Original
"Rebecca Louise Evans",
"Breon Schmidt",
"Andrew Lonsdale",
"Simon Sadedin",
"Nadia Davidson",
"Quarkins",
"Jovana Maksimovic",
"Alicia Oshlack",
# Janis rewrite
"Richard Lupat",
"Jiaan Yu",
"Michael Franklin",
],
documentation="""
Clinical pipeline for detecting gene fusions in RNAseq data utilising JAFFA. The pipeline optionally calls a classifier
for B-Cell Acute Lymphocytic Leukaemia (based on AllSorts). As well as variant calling pipeline using Picard,GATK and VEP.
A poster was also presented at ABACBS2018 noting the current status and future plans:
`Oncopipe ABACBS 2018 <https://atlassian.petermac.org.au/bitbucket/projects/OS/repos/oncopipe/browse/Oncopipe_ABACBS_v6.pdf>`_
Original code example:
.. code-block: text
bpipe run -r \
-p name=SAMPLE_ID \
-p out=OUTPUT_PATH \
-p fastq=FASTQ_GZ_FILES \
PATH_TO_THIS_DIR/pipeline/onco.pipe
""",
)
def bind_metadata(self):
return WorkflowMetadata(version="v0.1.0",
contributors=["Michael Franklin", "Jiaan Yu"])
def bind_metadata(self):
return WorkflowMetadata(version="v0.1.0", contributors=["Jiaan Yu"])
