from jaratoolbox import celldatabase
subject = 'pinp021'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-07-26',
brainarea='rightThal',
info=['anteriorDiI', 'facingPosterior'])
experiments.append(exp0)
#Mouse on the rig at 1333hrs, waiting 10 mins for brain to settle
#Tetrodes at 1248um
# 1348 - tetrodes at 2510um, waiting for brain to settle
# exp0.add_site(2910, tetrodes=range(1, 9)).remove_tetrodes([5, 7, 8])
# exp0.add_session('14-16-29', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(3104, tetrodes=range(1, 9)).remove_tetrodes([7])
# exp0.add_session('14-21-53', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(3205, tetrodes=range(1, 9))
# exp0.add_session('14-37-33', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(3305, tetrodes=range(1, 9))
# exp0.add_session('14-45-25', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(3405, tetrodes=range(1, 9))
# exp0.add_session('14-52-54', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(3502, tetrodes=range(1, 9))
from jaratoolbox import celldatabase
subject = 'band056'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2018-03-22',
'left_AC',
info=['lateralDiO', 'TT1ant', 'soundright'])
experiments.append(exp0)
exp0.laserCalibration = {
'1.0': 3.3,
'2.0': 3.8,
'3.0': 4.35,
'4.0': 4.9,
'5.0': 5.45,
'7.5': 6.75,
'10.0': 8.2
}
exp0.add_site(900, tetrodes=[2, 4, 6, 8])
exp0.add_session('16-39-33', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('16-40-59', None, 'lasernoisebursts', 'bandwidth_am')
exp0.add_session('16-42-29', 'a', 'tuningCurve', 'am_tuning_curve')
exp0.add_session('16-50-57', 'b', 'AM', 'am_tuning_curve')
exp0.add_session('16-58-12', 'c', 'laserBandwidth', 'bandwidth_am')
exp0.add_session('17-22-28', 'd', 'noiseAmps', 'am_tuning_curve')
exp0.add_site(1000, tetrodes=[2, 4, 6, 8])
exp0.add_session('17-40-25', None, 'noisebursts', 'am_tuning_curve')
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'dapa003'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-08-25',
'right_AudStr',
info='midAnteriorfacingAnterior')
experiments.append(exp0)
exp0.add_site(2050, tetrodes=[1, 2, 3, 4, 5, 6])
exp0.add_session('15-44-34', None, 'noisebursts', 'am_tuning_curve')
exp0.add_site(2100, tetrodes=[1, 2, 3, 4, 5, 6])
exp0.add_session('16-37-38', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('16-41-14', 'a', 'tuningCurve', 'am_tuning_curve')
exp0.add_site(2150, tetrodes=[1, 2, 3, 4, 5, 6])
exp0.add_session(
'17-04-14', None, 'noisebursts', 'am_tuning_curve'
) #channel 7 (weird, high activity - looks like broken probes) included with this and previous sessions
exp0.add_session('17-08-41', None, 'noisebursts',
'am_tuning_curve') #channel 7 excluded
exp0.add_session('17-20-51', None, 'tuningCurve',
'am_tuning_curve') #Forgot to save behavior
exp0.add_site(2275, tetrodes=[1, 2, 3, 4, 5, 6])
exp0.add_session('18-02-39', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('18-05-15', None, 'tuningCurve',
# experiments.append(exp2)
#
# exp2.laserCalibration = {
# '0.5':1.5,
# '1.0':2.1,
# '1.5':2.8,
# '2.0':3.55,
# '2.5':4.35,
# '3.0':5.45,
# '3.5':6.7
# }
#bad probe, no signal
exp3 = celldatabase.Experiment(subject,
'2018-03-11',
'right_AC',
info=['lateralDiD', 'TT1ant', 'sound_left'])
experiments.append(exp3)
# no laser calibration as had to switch out probe with mouse already in rig, using previous calibration for this probe
#
# exp3.add_site(925, tetrodes=[4,8])
# exp3.add_session('14-06-23', None, 'noisebursts', 'am_tuning_curve')
#
# exp3.add_site(1450, tetrodes=[8])
# exp3.add_session('15-45-11', None, 'noisebursts', 'am_tuning_curve')
# exp3.add_session('15-46-28', None, 'laserPulse', 'am_tuning_curve')
#
# exp3.add_site(1500, tetrodes=[8])
# exp3.add_session('16-06-03', None, 'laserPulse', 'am_tuning_curve')
#
from jaratoolbox import celldatabase as cellDB
subject = 'adap012'
experiments = []
experiment = cellDB.Experiment(subject,
date='2016-02-04',
brainarea='rightAStr',
info='')
experiments.append(experiment)
site1 = experiment.add_site(depth=2340,
date='2016-02-04',
tetrodes=[1, 2, 3, 4, 5, 6, 7, 8])
experiment.add_session('12-22-27', None, 'noiseburst',
'laser_tuning_curve') #amp=0.1
experiment.add_session('12-24-57', 'a', 'tc',
'laser_tuning_curve') #2-40Hz chords, 50dB
experiment.add_session('12-31-33', 'b', 'tc', 'laser_tuning_curve')
experiment.add_session('12-35-00', 'c', 'tc', 'laser_tuning_curve')
experiment.add_session('12-41-31', 'a', 'behavior', paradigm='2afc')
site1 = experiment.add_site(depth=2380,
date='2016-02-05',
tetrodes=[1, 2, 3, 4, 5, 6, 7, 8])
experiment.add_session('12-58-26', None, 'noiseburst',
'laser_tuning_curve') #amp=0.1
experiment.add_session('13-01-15', 'a', 'tc',
'laser_tuning_curve') #2-40Hz chords, 50dB
experiment.add_session('13-09-08', 'b', 'tc', 'laser_tuning_curve')
experiment.add_session('13-14-22', 'a', 'behavior', paradigm='2afc')
site1 = experiment.add_site(depth=2380,
from jaratoolbox import celldatabase
subject = 'chad011'
experiments = []
exp0 = celldatabase.Experiment(
subject,
'2018-12-26',
'right_AC',
info=['midMedialDiD'
'facingAnterior'
'soundLeft'])
experiments.append(exp0)
exp0.add_site(1100, tetrodes=[1, 2, 3, 4, 5, 7, 8])
#exp0.add_session('14-44-31', None, 'noiseburst', 'am_tuning_curve')
#Santiago deleted spikes data file.
#The most anterior shank touched the surface of the brain before the other shanks; the probe was zeroed when all four shanks touched the surface of brain.
exp0.maxDepth = 1100
exp1 = celldatabase.Experiment(
subject,
'2018-12-27',
'right_AC',
info=['midLateralDiD'
'facingAnterior'
'soundLeft'])
#The probe is near the anterior limit of the craniotomy.
experiments.append(exp1)
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'd1pi032'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2019-02-19',
'right_AudStr',
info=['FacingPosterior', 'AnteriorDiD'])
experiments.append(exp0)
#50 noiseburst, 50 laser pulse, 40 laser train, 160 tuningTest 1760 tc, 220 AM
#Used left speaker;laser (445 nm) set to 2 mW; Probe CEC2; Rig 2
exp0.laserCalibration = {
'0.5': 1.48,
'1.0': 2.00,
'1.5': 2.58,
'2.0': 3.15,
'2.5': 3.58,
'3.0': 4.40,
'3.5': 5.35,
'4.0': 6.10
}
#Tetrode 2 has reference; threshold set to 55mV
exp0.add_site(2900, tetrodes=[1, 3, 4, 5, 6, 7, 8])
exp0.add_session('17-40-01', None, 'noiseburst', 'am_tuning_curve')
exp0.add_session('17-47-11', None, 'lasertrain', 'am_tuning_curve')
#Making an inforec
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'test000'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2018-06-25',
'right_AudStr',
info=['posteriorDiD', 'FacingPosterior'])
experiments.append(exp0)
#Comment about speakers used, power of laser, and specific probe used
exp0.laserCalibration = {
'OutputDecimal': LevelDecimal
#0.5-4.0
}
#tetrode 6 is the reference, threshold is
exp0.add_site(2500, tetrodes=[1, 2, 3, 4, 5, 7, 8])
exp0.add_session('12-26-26', None, 'noiseburst', 'am_tuning_curve')
exp0.add_session('12-31-02', None, 'laser', 'am_tuning_curve')
exp0.add_site(2550, tetrodes=[1, 2, 3, 4, 5, 7, 8])
exp0.add_session('12-41-13', None, 'noiseburst', 'am_tuning_curve')
exp0.add_session('12-43-43', None, 'laser', 'am_tuning_curve')
exp0.add_session('12-50-44', 'a', 'tuningCurve', 'am_tuning_curve')
exp0.add_session('12-58-17', 'b', 'laserTuningCurve', 'laser_am_tuning_curve')
exp0.add_site(2600, tetrodes=[1, 2, 3, 4, 5, 7, 8])
from jaratoolbox import celldatabase as cellDB
subject = 'adap012'
experiments = []
exp = cellDB.Experiment(subject,
date='2016-02-04',
brainarea='rightAStr',
info='')
experiments.append(exp)
site1 = exp.add_site(depth=2340, tetrodes=[1, 2, 3, 4, 5, 6, 7, 8])
site1.add_session('12-22-27', None, 'noiseburst',
'laser_tuning_curve') #amp=0.1
site1.add_session('12-24-57', 'a', 'tc',
'laser_tuning_curve') #2-40Hz chords, 50dB
site1.add_session('12-31-33', 'b', 'tc', 'laser_tuning_curve')
site1.add_session('12-35-00', 'c', 'tc', 'laser_tuning_curve')
site1.add_session('12-41-31', 'a', 'behavior', paradigm='2afc')
exp = cellDB.Experiment(subject,
date='2016-02-05',
brainarea='rightAStr',
info='')
experiments.append(exp)
site1 = exp.add_site(depth=2380, tetrodes=[1, 2, 3, 4, 5, 6, 7, 8])
site1.add_session('12-58-26', None, 'noiseburst',
'laser_tuning_curve') #amp=0.1
site1.add_session('13-01-15', 'a', 'tc',
'laser_tuning_curve') #2-40Hz chords, 50dB
site1.add_session('13-09-08', 'b', 'tc', 'laser_tuning_curve')
site1.add_session('13-14-22', 'a', 'behavior', paradigm='2afc')
from jaratoolbox import celldatabase
subject = 'pinp005'
experiments = []
exp0 = celldatabase.Experiment(subject, '2015-08-05', brainarea='cortex')
experiments.append(exp0)
# site1=rd.add_site(depth=1135, tetrodes=[ 3 ])
exp0.add_site(1135, tetrodes=[3])
exp0.add_session('21-10-44', None, 'NoiseBurst', 'laser_tuning_curve')
exp0.add_session('21-13-44', None, 'LaserPulse', 'laser_tuning_curve')
exp0.add_session('21-16-19', None, 'LaserTrain', 'laser_tuning_curve')
exp0.add_session('21-20-41', 'a', 'TuningCurve', 'laser_tuning_curve')
# site2=rd.add_site(depth=1192, tetrodes=[ 3 , 6 ])
exp0.add_site(1192, tetrodes=[3, 6])
exp0.add_session('21-40-59', None, 'NoiseBurst', 'laser_tuning_curve')
exp0.add_session('21-43-40', None, 'LaserPulse',
'laser_tuning_curve') #Not laser responsive
exp0.add_session('21-46-24', 'b', 'ShortTC',
'laser_tuning_curve') #Only at 60dB
# site4=rd.add_site(depth=1722, tetrodes=[ 3, 4, 5, 6 ])
exp0.add_site(1722, tetrodes=[3, 4, 5, 6])
exp0.add_session('23-25-52', None, 'NoiseBurst', 'laser_tuning_curve')
exp0.add_session('23-28-19', None, 'LaserPulse',
'laser_tuning_curve') #Good responses on TT4
from jaratoolbox import celldatabase
subject = 'pinp022'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-09-01',
brainarea='rightThal',
info=['anteriorDiD', 'facingPosterior'])
experiments.append(exp0)
exp0.add_site(3022, tetrodes=[5, 6, 7, 8])
exp0.add_session('12-12-33', None, 'noiseburst', 'am_tuning_curve')
exp0.add_session('12-16-32', None, 'laserpulse', 'am_tuning_curve')
exp0.add_site(3282, tetrodes=[5, 6, 7, 8])
exp0.add_session('12-33-10', None, 'laserpulse', 'am_tuning_curve')
exp0.add_site(3353, tetrodes=[5, 6, 7, 8])
exp0.add_session('12-38-52', None, 'laserpulse', 'am_tuning_curve')
exp0.add_site(3420, tetrodes=[5, 6, 7, 8])
exp0.add_session('12-48-27', None, 'laserpulse', 'am_tuning_curve')
exp0.add_site(3505, tetrodes=[5, 6, 7, 8])
exp0.add_session('12-51-19', None, 'laserpulse', 'am_tuning_curve')
exp0.add_site(3558, tetrodes=[5, 6, 7, 8])
exp0.add_session('12-55-32', None, 'laserpulse', 'am_tuning_curve')
exp0.add_site(3652, tetrodes=[5, 6, 7, 8])
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'dapa006'
experiments=[]
exp0 = celldatabase.Experiment(subject, '2017-09-27', 'left_AudStr', info='AnteriorfacingAnteriorDiI')
experiments.append(exp0)
exp0.laserCalibration = {
'0.5':1.6,
'1.0':2.28,
'1.5':2.94,
'2.0':3.5,
'2.5':4.58,
'3.0':5.6,
'3.5':7.4
}
exp0.add_site(2000, tetrodes=[1,2,3,4,5,6,7,8])
exp0.add_session('18-48-03', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('18-53-05', 'a', 'laserTuningCurve', 'laser_am_tuning_curve')
#Computer full; open-ephys froze mid recording
exp1 = celldatabase.Experiment(subject, '2017-09-27', 'left_AudStr', info='MedialfacingAnteriorDiD')
experiments.append(exp1)
exp1.laserCalibration = {
'0.5':1.6,
'1.0':2.25,
#coding=utf-8
from jaratoolbox import celldatabase
subject = 'pinp020'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-05-09',
brainarea='rightAstr',
info=['anteriorDiI', 'facingPosterior'])
experiments.append(exp0)
# exp0.add_site(994, tetrodes=range(1, 9))
# exp0.add_session('10-32-12', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(1581, tetrodes=range(1, 9))
# exp0.add_session('10-37-18', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(2100, tetrodes=range(1, 9))
# exp0.add_session('10-41-12', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_site(2607, tetrodes=range(1, 9))
# exp0.add_session('10-44-48', None, 'noiseburst', 'am_tuning_curve')
exp0.add_site(2702, tetrodes=range(1, 9))
exp0.add_session('10-57-28', None, 'noiseburst', 'am_tuning_curve')
exp0.add_session('11-01-52', 'a', 'am', 'am_tuning_curve')
exp0.add_session('11-19-15', 'b', 'tc', 'am_tuning_curve')
exp0.add_site(2802, tetrodes=range(1, 9))
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band029'
experiments=[]
exp0 = celldatabase.Experiment(subject, '2017-05-22', 'right_AC', info=['medialDiD','TT1ant','sound_left'])
experiments.append(exp0)
exp0.laserCalibration = {
'0.5':0.85,
'1.0':1.45,
'1.5':2.1,
'2.0':3.0,
'2.5':4.1,
'3.0':5.3,
'3.5':6.1
}
# exp0.add_site(1140, tetrodes = [1,2,4,6,7,8])
# exp0.add_session('11-47-27', None, 'laserPulse', 'am_tuning_curve')
#
# exp0.add_site(1160, tetrodes = [1,2,4,6,8])
# exp0.add_session('11-52-13', None, 'laserPulse', 'am_tuning_curve')
#
# exp0.add_site(1180, tetrodes = [1,2,4,6,8])
# exp0.add_session('11-57-16', None, 'laserPulse', 'am_tuning_curve')
#
# exp0.add_site(1200, tetrodes = [2,4,6,8])
# exp0.add_session('12-00-43', None, 'laserPulse', 'am_tuning_curve')
#
from jaratoolbox import celldatabase
subject = 'band033'
experiments=[]
exp0 = celldatabase.Experiment(subject, '2017-07-27', 'right_AC', info=['medialDiI','TT1ant','sound_left'])
experiments.append(exp0)
exp0.laserCalibration = {
'0.5':2.3,
'1.0':3.9,
'1.5':6.4,
'2.0':10.0
} #looks like I got quite a bit of dye on the fiber
# exp0.add_site(1400, tetrodes=[2,4,6,8])
# exp0.add_session('13-28-16', None, 'laserPulse', 'am_tuning_curve')
# exp0.add_session('13-29-46', None, 'noisebursts', 'am_tuning_curve')
#
# exp0.add_site(1425, tetrodes=[2,4,6,8])
# exp0.add_session('13-34-10', None, 'laserPulse', 'am_tuning_curve')
#
# exp0.add_site(1450, tetrodes=[4,8])
# exp0.add_session('13-37-09', None, 'laserPulse', 'am_tuning_curve')
# exp0.add_session('13-38-23', None, 'noisebursts', 'am_tuning_curve')
#
# exp0.add_site(1475, tetrodes=[1,2,8])
# exp0.add_session('13-45-30', None, 'laserPulse', 'am_tuning_curve')
#
# exp0.add_site(1500, tetrodes=[1,2,6,8])
# exp0.add_session('13-50-34', None, 'laserPulse', 'am_tuning_curve')
# exp0 = celldatabase.Experiment(subject, '2017-05-03', 'right_AC', info=['medialDiI','TT1ant','sound_left'])
# experiments.append(exp0)
#
# exp0.laserCalibration = {
# '0.5':0.9,
# '1.0':1.45,
# '1.5':2.15,
# '2.0':2.9,
# '2.5':4.05,
# '3.0':5.2,
# '3.5':6.4
# }
#nothing but spooky signals all the way down... Nick's probe sucks.
exp1 = celldatabase.Experiment(subject, '2017-05-05', 'right_AC', info=['middleDiD','TT1ant','sound_left'])
experiments.append(exp1)
exp1.laserCalibration = {
'0.5':0.9,
'1.0':1.45,
'1.5':2.05,
'2.0':2.7,
'2.5':3.5,
'3.0':4.4,
'3.5':5.3
}
# exp1.add_site(1282, tetrodes = [2,4,6,8])
# exp1.add_session('10-32-01', None, 'laserPulse', 'am_tuning_curve')
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band055'
experiments=[]
exp0 = celldatabase.Experiment(subject, '2018-03-14', 'right_AC', info=['medialDiI','TT1ant','soundleft'])
experiments.append(exp0)
exp0.laserCalibration = {
'1.0':3.4,
'2.0':3.8,
'3.0':4.4,
'4.0':4.9,
'5.0':5.4,
'7.5':6.75,
'10.0':8.05
}
# #trying 5mW laser to start
# exp0.add_site(900, tetrodes=[1,2,4,6,8])
# exp0.add_session('10-57-53', None, 'noisebursts', 'am_tuning_curve')
# exp0.add_session('11-01-37', None, 'lasernoisebursts', 'bandwidth_am')
# #no particular difference between laser and non-laser trials
#
# exp0.add_site(925, tetrodes=[1,2,4,6,8])
# exp0.add_session('11-21-00', None, 'noisebursts', 'am_tuning_curve')
# exp0.add_session('11-22-13', None, 'lasernoisebursts', 'bandwidth_am')
exp0.add_site(950, tetrodes=[1,2,4,6,8])
exp0.add_session('11-35-36', None, 'noisebursts', 'am_tuning_curve')
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'dapa014'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2018-04-23',
'left_AudStr',
info=['FacingPosterior', 'AnteriorDiI'])
experiments.append(exp0)
#Used both speakers; 2.5 mW for laser; probe DAF4
exp0.laserCalibration = {
'0.5': 0.8,
'1.0': 1.3,
'1.5': 1.8,
'2.0': 2.3,
'2.5': 2.8,
'3.0': 3.4,
'3.5': 4.25,
'4.0': 5.05
}
#Tetrode 7 has reference; threshold set to 55mV
exp0.add_site(2900, tetrodes=[1, 3, 4, 5, 6])
exp0.add_session('16-05-43', None, 'noisebursts', 'am_tuning_curve')
#Lots of noise; couldn't find any useable signals
exp0.maxDepth = 2900
from jaratoolbox import celldatabase
subject = 'pinp016'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-03-07',
brainarea='rightAC',
info=['medialDiI', 'facingLateral'])
experiments.append(exp0)
# exp0site0 = exp0.add_site(1391, tetrodes=range(1, 9))
# exp0site0.tetrodes.remove(1)
# exp0site0.tetrodes.remove(3)
# exp0site0.tetrodes.remove(4)
# exp0.add_session('13-56-23', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_session('13-59-17', None, 'laserpulse', 'am_tuning_curve')
# exp0.add_session('14-01-57', None, 'lasertrain', 'am_tuning_curve')
# exp0.add_session('14-06-13', 'a', 'am', 'am_tuning_curve') #Nothing really here
# exp0.add_site(1469, tetrodes=range(1, 9))
# exp0.add_session('14-25-26', None, 'noiseburst', 'am_tuning_curve')
# exp0site1 = exp0.add_site(1670, tetrodes=range(1, 9))
# exp0site1.tetrodes.remove(3)
# exp0.add_session('14-30-34', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_session('14-33-38', None, 'laserpulse', 'am_tuning_curve')
# exp0.add_session('14-35-29', None, 'lasertrain', 'am_tuning_curve')
# exp0.add_session('14-39-14', 'b', 'am', 'am_tuning_curve') #Still nothing much...
# exp0.add_site(2123, tetrodes=range(1, 9))
from jaratoolbox import celldatabase
subject = 'band090'
experiments = []
experiment = celldatabase.Experiment(subject,
'2020-01-13',
brainarea='rightAC',
info='')
experiments.append(experiment)
experiment.add_site(1000, date='2020-01-13', tetrodes=range(1, 9))
experiment.add_session('14-13-31', None, 'behavior', '2afc')
experiment.add_session('14-16-15', None, 'noisebursts', 'am_tuning_curve')
experiment.add_site(1000, date='2020-01-14',
tetrodes=range(1, 9)) # channel 17 ref
experiment.add_session('14-17-15', None, 'laserPulse',
'am_tuning_curve') # 200 ms long pulses
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band043'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-12-12',
'left_AC',
info=['medialDiI', 'TT1ant', 'soundright'])
experiments.append(exp0)
exp0.laserCalibration = {
'0.5': 1.4,
'1.0': 1.75,
'1.5': 2.25,
'2.0': 2.8,
'2.5': 3.35,
'3.0': 3.95,
'3.5': 4.65
}
exp0.add_site(825, tetrodes=[8])
exp0.add_session('12-11-20', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('12-12-37', None, 'laserPulse', 'am_tuning_curve')
exp0.add_site(875, tetrodes=[6, 8])
exp0.add_session('12-38-43', None, 'noisebursts', 'am_tuning_curve')
exp0.add_site(900, tetrodes=[2, 4, 6, 7, 8])
exp0.add_session('12-52-20', None, 'noisebursts', 'am_tuning_curve')
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'dapa013'
experiments=[]
exp0 = celldatabase.Experiment(subject, '2018-04-03', 'left_AudStr', info=['FacingPosterior', 'AnteriorDiI'])
experiments.append(exp0)
#Used both speakers; 2.5 mW for laser; probe DAF4
exp0.laserCalibration = {
'0.5':0.85,
'1.0':1.3,
'1.5':1.65,
'2.0':2.0,
'2.5':2.3,
'3.0':2.85,
'3.5':3.35,
'4.0':4.05
}
#Tetrode 7 has reference; threshold set to 55mV
exp0.add_site(2500, tetrodes=[5,6,8])
exp0.add_session('13-13-44', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('13-18-20', 'a', 'tuningCurve', 'am_tuning_curve')
exp0.add_site(2550, tetrodes=[5,6,8])
exp0.add_session('13-24-02', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('13-26-17', 'b', 'tuningCurve', 'am_tuning_curve')
# exp0.laserCalibration = {
# '0.5':0.95,
# '1.0':1.8,
# '1.5':2.5,
# '2.0':3.75,
# '2.5':4.7,
# '3.0':5.8,
# '3.5':6.7
# }
# exp0.add_site(950, tetrodes = [2])
# exp0.add_session('15-27-14', None, 'noisebursts', 'am_tuning_curve')
# exp0.add_session('15-30-37', None, 'laserPulse', 'am_tuning_curve')
exp1 = celldatabase.Experiment(subject,
'2016-11-10',
'right_AC',
info=['medialDiD', 'TT1ant', 'sound_left'])
experiments.append(exp1)
exp1.laserCalibration = {
'0.5': 1.1,
'1.0': 2.0,
'1.5': 2.9,
'2.0': 4.4,
'2.5': 5.8,
'3.0': 6.8,
'3.5': 8.2
}
# exp1.add_site(1090, tetrodes = [2])
# exp1.add_session('13-17-42', None, 'noisebursts', 'am_tuning_curve')
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band031'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-06-29',
'right_AC',
info=['middleDiI', 'TT1ant', 'sound_left'])
experiments.append(exp0)
exp0.laserCalibration = {
'0.5': 1.65,
'1.0': 2.45,
'1.5': 3.5,
'2.0': 4.4,
'2.5': 5.8,
'3.0': 7.6
}
# exp0.add_site(950, tetrodes=[2,4,6,7,8])
# exp0.add_session('12-22-15', None, 'laserPulse', 'am_tuning_curve')
#
# exp0.add_site(1000, tetrodes=[2,4,6,7,8])
# exp0.add_session('12-45-10', None, 'laserPulse', 'am_tuning_curve')
# exp0.add_session('12-53-05', None, 'noisebursts', 'am_tuning_curve')
exp0.add_site(1020, tetrodes=[2, 4, 6, 7, 8])
exp0.add_session('12-58-56', None, 'laserPulse', 'am_tuning_curve')
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band005'
experiments = []
exp0 = celldatabase.Experiment(subject, '2016-09-16')
experiments.append(exp0)
exp0.laserCalibration = {
'0.5': 0.7,
'1.0': 1.15,
'1.5': 1.6,
'2.0': 2.1,
'2.5': 2.65,
'3.0': 3.35,
'3.5': 4.1
}
exp0.add_site(1037, tetrodes=[2])
exp0.add_session('12-14-13', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('12-17-37', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('12-20-17', None, 'laserPulse', 'am_tuning_curve')
exp0.add_session('12-22-56', None, 'laserTrain', 'am_tuning_curve')
exp0.add_session('12-25-50', 'a', 'tuningCurve', 'am_tuning_curve')
exp0.add_site(1140, tetrodes=[2, 4, 6])
exp0.add_session('12-54-16', None, 'laserPulse', 'am_tuning_curve')
exp0.add_session('12-56-52', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('13-00-40', 'b', 'tuningCurve', 'am_tuning_curve')
exp0.add_session('13-13-32', 'c', 'AM', 'am_tuning_curve')
# 3.0: 4.0, 46.6
# 3.5: 5.0, 56.9
# 4.0: 5.95, 66.6
# """
#
# # Animal in rig at: 11:43
# # Probe in at:
#
# # Extensive bleeding in right craniotomy. Bled for an hour and a half before
# # being sealed with gel foam
#
# exp0.maxDepth = 0
exp1 = celldatabase.Experiment(subject,
'2019-09-10',
'left_AudStr',
'posteriorDiI',
info=['TT1left', 'soundRight', 'A4x2-tet'])
experiments.append(exp1)
#50 noiseburst, 50 laser pulse, 40 laser train, 160 tuningTest, 1760 tc, 220 AM
#Used left speaker;laser (445 nm) set to 2.0 mW; Probe D65D; Rig 2
"""
Laser Calibration
Power: Value on laser dial, value in output level
0.5: 1.45, 18.4
1.0: 1.95, 23.4
1.5: 2.60, 30.0
2.0: 3.20, 36.5
2.5: 3.75, 42.5
3.0: 4.40, 49.3
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band058'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2018-04-26',
'left_AC',
info=['medialDiD', 'TT1ant', 'soundright'])
experiments.append(exp0)
exp0.laserCalibration = {
'1.0': 3.4,
'2.0': 3.9,
'3.0': 4.45,
'4.0': 5.0,
'5.0': 5.6,
'7.5': 6.9,
'10.0': 8.35
}
# exp0.add_site(1000, tetrodes=[1,2,7,8])
# exp0.add_session('13-07-09', None, 'noisebursts', 'am_tuning_curve')
#
# exp0.add_site(1050, tetrodes=[2,7,8])
# exp0.add_session('13-22-38', None, 'noisebursts', 'am_tuning_curve')
#
# exp0.add_site(1100, tetrodes=[2,7,8])
# exp0.add_session('14-21-10', None, 'noisebursts', 'am_tuning_curve')
#
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band061'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2018-05-28',
'right_AC',
info=['medialDiD', 'TT1ant', 'soundleft'])
experiments.append(exp0)
exp0.laserCalibration = {
'1.0': 3.55,
'2.0': 4.35,
'3.0': 5.1,
'4.0': 5.9,
'5.0': 6.75,
'7.5': 8.7
}
exp0.add_site(1400, tetrodes=[1, 6])
exp0.add_session('12-36-49', None, 'noisebursts', 'am_tuning_curve')
#cll channels pretty silent, probe probably busted
exp0.maxDepth = 1500
exp1 = celldatabase.Experiment(subject,
'2018-05-29',
'right_AC',
info=['medialDiO', 'TT1ant', 'soundleft'])
# exp0.add_site(2381, tetrodes=range(1, 9))
# exp0.add_session('14-42-17', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_session('14-44-45', 'f', 'tc', 'am_tuning_curve')
# exp0.add_site(2482, tetrodes=range(1, 9))
# exp0.add_session('15-08-43', None, 'noiseburst', 'am_tuning_curve')
# exp0.add_session('15-10-58', 'g', 'tc', 'am_tuning_curve')
# exp0.add_site(2585, tetrodes=range(1, 9))
# exp0.add_session('15-38-03', None, 'noiseburst', 'am_tuning_curve') #No more sound response, done for the day
# EXPERIMENT ABOVE COLLECTED WIth ONLY THE L SPEAKER ACTIVE
exp1 = celldatabase.Experiment(
subject,
'2017-06-06',
brainarea='rightAStr',
info=['anteriorDiD', 'facingPosterior', 'medial:None', 'lateral:1,2'])
experiments.append(exp1)
#Mouse on the rig at 10:03, waiting 10 mins for brain to settle
exp1.add_site(1938, tetrodes=range(1, 9)).remove_tetrodes(6)
exp1.add_session('10-42-36', None, 'noiseburst', 'am_tuning_curve')
exp1.add_session('10-45-09', 'a', 'tc', 'am_tuning_curve')
# exp1.add_site(2157, tetrodes=range(1, 9))
# exp1.add_session('11-10-28', None, 'noiseburst', 'am_tuning_curve')
# # exp1.add_session('10-45-09', 'a', 'tc', 'am_tuning_curve')
exp1.add_site(2426, tetrodes=range(1, 9)).remove_tetrodes(3)
from jaratoolbox import celldatabase
reload(celldatabase)
subject = 'band023'
experiments = []
exp0 = celldatabase.Experiment(subject,
'2017-03-20',
brainarea='right_thalamus',
info='anteriorDiI')
experiments.append(exp0)
exp0.add_site(3301, tetrodes=[1, 2, 5, 7])
exp0.add_session('09-50-03', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('09-53-17', 'a', 'tuningCurve', 'am_tuning_curve')
exp0.add_session('10-04-39', 'b', 'AM', 'am_tuning_curve')
exp0.add_session(
'10-11-28', 'c', 'bandwidth',
'bandwidth_am') #22kHz, 32Hz for TT2 (only sound responsive one anyway)
exp0.add_session('10-31-21', 'd', 'noiseAmps', 'am_tuning_curve')
exp0.add_site(3418, tetrodes=[1, 2, 4, 7, 8])
exp0.add_session('10-40-40', None, 'noisebursts', 'am_tuning_curve')
exp0.add_session('10-43-49', 'e', 'tuningCurve', 'am_tuning_curve')
exp0.add_session('10-55-45', 'f', 'AM', 'am_tuning_curve')
exp0.add_session('11-03-16', 'g', 'bandwidth',
'bandwidth_am') #15kHz, 64Hz for TT2
exp0.add_session('11-23-39', 'h', 'bandwidth',
'bandwidth_am') #5kHz, 64Hz for TT4
exp0.add_session('11-48-57', 'i', 'noiseAmps', 'am_tuning_curve')