def soft_tfidf(text, hypo):
global tf
#print(text)
text = ' '.join(text)
hypo = ' '.join(hypo)
#print(text)
text_resp = tf.transform([text])
hypo_resp = tf.transform([hypo])
valores_tf_idf_text = []
valores_tf_idf_hypo = []
features_names_text = []
features_names_hypo = []
feature_names = tf.get_feature_names()
for col in text_resp.nonzero()[1]:
#print feature_names[col], ' - ', text_resp[0, col]
features_names_text.append(feature_names[col])
valores_tf_idf_text.append(text_resp[0, col])
#print("---------------")
for col in hypo_resp.nonzero()[1]:
#print feature_names[col], ' - ', hypo_resp[0, col]
features_names_hypo.append(feature_names[col])
valores_tf_idf_hypo.append(hypo_resp[0, col])
valor = 0
for i, word_t in enumerate(features_names_text):
for j, word_h in enumerate(features_names_hypo):
if jaro.jaro_winkler_metric(word_t, word_h) > 0.9:
valor += jaro.jaro_winkler_metric(
(word_t),
(word_h)) * valores_tf_idf_text[i] * valores_tf_idf_hypo[j]
#print(valor)
return valor
def jaro_winkler(__str1, __str2):
def to_unicode(__str):
if isinstance(__str, unicode):
return __str
return unicode(__str)
return jaro.jaro_winkler_metric(to_unicode(__str1), to_unicode(__str2))
def create_similarity_matrix(sentences):
'''
The purpose of this function will be to create an N x N similarity matrix.
N represents the number of sentences and the similarity of a pair of sentences
will be determined through the Jaro-Winkler Score.
params:
sentences (List -> String) : This is a list of strings you want to create
the similarity matrix with.
returns:
This function will return a square numpy matrix
'''
# identify sentence similarity matrix with Jaro Winkler score
sentence_length = len(sentences)
sim_mat = np.zeros((sentence_length, sentence_length))
for i in range(sentence_length):
for j in range(sentence_length):
if i != j:
similarity = jaro.jaro_winkler_metric(sentences[i],
sentences[j])
sim_mat[i][j] = similarity
return sim_mat
def jwSim(v1, v2):
try:
return jaro.jaro_winkler_metric(v1.decode('utf-8').strip().lower(), v2.decode('utf-8').strip().lower())
except:
# print v1
# print v2
return 0.
def jaro_w(word, topSimilarity):
nw_candidates = {}
for c in freqDict:
similiarity = jaro.jaro_winkler_metric(word, c)
if similiarity > 0.5:
nw_candidates[c] = similiarity
if len(nw_candidates) == 0:
return [word]
else:
sorted_candidates_word_freq = sorted(nw_candidates.items(),
key=lambda x: x[1],
reverse=True)
sorted_candidate_word = []
for i in range(len(sorted_candidates_word_freq)):
sorted_candidate_word.append(sorted_candidates_word_freq[i][0])
words = []
if topSimilarity:
return sorted_candidate_word[0:min(candidates_nb,
len(sorted_candidate_word) -
1)] # Les 3 premiers mots
else:
sorted_candidate_word = sorted_candidate_word[
0:min(candidates_nb,
len(sorted_candidate_word) - 1)]
for i in range(min(len(sorted_candidate_word), candidates_nb)):
words.append(max(sorted_candidate_word, key=P))
sorted_candidate_word.remove(words[i])
return words
def match_by_title(query, result_titles, correct_titles):
import jaro
# print '\n%s' % query
# print '\n'.join(result_titles), '\n'
# print '\n'.join(sorted(correct_titles)), '\n'
# Apply lower case in all entries first
correct_titles = map(unicode.lower, correct_titles)
matched_ids = []
for rtitle in result_titles:
rtitle = rtitle.lower()
best_jw = 0.0
best_id = 0
for i, ctitle in enumerate(correct_titles):
jw = jaro.jaro_winkler_metric(unicode(rtitle), unicode(ctitle))
if (jw > best_jw):
best_jw = jw
best_id = i
# Check if we have a match
if (best_jw >= 0.9):
matched_ids.append(str(best_id))
else:
matched_ids.append('')
# Create an incremental list of string ids for the correct
# titles, since they are not in the database
correct_ids = map(str, range(len(correct_titles)))
return correct_ids, matched_ids
def findFamilyOrNot(surnames, row):
result = []
a = combinations(range(len(surnames)), 2)
for check in a:
result.append(
jr.jaro_winkler_metric(surnames[check[0]], surnames[check[1]]))
if len(result) == 0:
if int(row['age']) >= 18:
return "single_adult"
else:
return "single_child"
elif max(result) > .86:
return "family"
else:
return "probable family or not"
def findParenting(row, uiText=True):
if not row['surnames']:
return
surnames = row['surnames']
if len(surnames) < 2:
return
ages = list(map(int, row["roomies"].split(',')))
ages_abs = [abs(int(x)) for x in ages]
ages_under18 = [x for x in ages_abs if x < 18]
age_surname_dict = dict(zip(ages_abs, surnames))
parent_type = set()
if (row['age'] >= 18) and (len(ages_under18) > 0):
for child_age in ages_under18:
if (jr.jaro_winkler_metric(row['surname'],
age_surname_dict[child_age])) > .80:
parent_type.add(parentingType(child_age, uiText))
if len(parent_type):
return parent_type.pop() if uiText else "/".join(parent_type)
def jaro_winkler(s1: str, s2: str):
dis = jaro.jaro_winkler_metric(s1, s2)
# print(f'Jaro-Winkler: {dis}')
return dis
import jaro
with open("password1_analysis.txt", "w") as writer:
writer.write("actual, guess, jaro-winkler\n")
total = 0.0
number = 0.0
with open("password1.txt", "r") as f:
f.readline()
for line in f.readlines():
parts = line.split()
actual = parts[1]
guess = parts[2]
#edit_distance = editdistance.eval(actual, guess)
jaro_winkler = jaro.jaro_winkler_metric(unicode(actual), unicode(guess))
total += jaro_winkler
number += 1
writer.write(actual + ", " + guess + ", " + str(jaro_winkler) + "\n")
writer.write("Average: " + str(total/number))
def recommendPaper(request):
cats = [
'astro-ph.GA',
'astro-ph.CO',
'astro-ph.EP',
'astro-ph.HE',
'astro-ph.IM',
'astro-ph.SR',
'cond-mat.dis-nn',
'cond-mat.mes-hall',
'cond-mat.other',
'cond-mat.quant-gas',
'cond-mat.soft',
'cond-mat.stat-mech',
'cond-mat.str-el',
'cond-mat.supr-con',
'gr-qc',
'hep-ex',
'hep-lat',
'hep-ph',
'hep-th',
'math.MP',
'nlin.AO',
'nlin.CG',
'nlin.CD',
'nlin.SI',
'nlin.PS',
'nucl-ex',
'nucl-th',
'physics.acc-ph',
'physics.app-ph',
'physics.atom-ph',
'physics.atm-clus',
'physics.bio-ph',
'physics.chem-ph',
'physics.class-ph',
'physics.comp-ph',
'physics.data-an',
'physics.flu-dyn',
'physics.gen-ph',
'physics.geo-ph',
'physics.hist-ph',
'physics.ins-det',
'physics.med-ph',
'physics.optics',
'physics.ed-ph',
'physics.soc-ph',
'physics.plasm-ph',
'physics.pop-ph',
'physics.space-ph',
'quant-ph',
'math.AG',
'math.AT',
'math.AP',
'math.CT',
'math.CA',
'math.CO',
'math.AC',
'math.CV',
'math.DG',
'math.DS',
'math.FA',
'math.GM',
'math.GN',
'math.GT',
'math.GR',
'math.HO',
'math.IT',
'math.KT',
'math.LO',
'math.MP',
'math.MG',
'math.NT',
'math.NA',
'math.OA',
'math.OC',
'math.PR',
'math.QA',
'math.RT',
'math.RA',
'math.SP',
'math.ST',
'math.SG',
'cs.AI',
'cs.CL',
'cs.CC',
'cs.CE',
'cs.CG',
'cs.GT',
'cs.CV',
'cs.CY',
'cs.CR',
'cs.DS',
'cs.DB',
'cs.DL',
'cs.DM',
'cs.DC',
'cs.ET',
'cs.FL',
'cs.GL',
'cs.GR',
'cs.AR',
'cs.HC',
'cs.IR',
'cs.IT',
'cs.LO',
'cs.LG',
'cs.MS',
'cs.MA',
'cs.MM',
'cs.NI',
'cs.NE',
'cs.NA',
'cs.OS',
'cs.OH',
'cs.PF',
'cs.PL',
'cs.RO',
'cs.SI',
'cs.SE',
'cs.SD',
'cs.SC',
'cs.SY',
'q-bio.BM',
'q-bio.CB',
'q-bio.GN',
'q-bio.MN',
'q-bio.NC',
'q-bio.OT',
'q-bio.PE',
'q-bio.QM',
'q-bio.SC',
'q-bio.TO',
'q-fin.CP',
'q-fin.EC',
'q-fin.GN',
'q-fin.MF',
'q-fin.PM',
'q-fin.PR',
'q-fin.RM',
'q-fin.ST',
'q-fin.TR',
'stat.AP',
'stat.CO',
'stat.ML',
'stat.ME',
'stat.OT',
'stat.TH',
'eess.AS',
'eess.IV',
'eess.SP',
'eess.SY',
'econ.EM',
'econ.GN',
'econ.TH',
'physics',
'astro-ph',
'cond-mat',
'nlin',
'physics',
'math',
'cs',
'CoRR',
'q-bio',
'q-fin',
'stat',
'eess',
'econ'
]
user = request.GET.get('user')
try:
obj = models.UserModel.objects.get(userName=user)
except:
return HttpResponse("invalid username")
sums = []
collectDict = ast.literal_eval(obj.collectDict)
for (k,v) in collectDict.items():
sums.append(v['summary'])
sums = sums[:20]
fields = []
focusList = obj.focusList
for f in focusList:
if int(f)<154:
fields.append(cats[int(f)-1])
random.shuffle(fields)
fields = fields[:1]
papers = []
for cat in fields:
print(cat)
url = "http://export.arxiv.org/api/query?search_query=cat:" + cat + "&sortBy=submittedDate&sortOrder=descending&max_results=10"
res = requests.get(url)
data = res.text
soup = bs(data, 'lxml')
entries = soup.find_all('entry')
for entry in entries:
newPaper = Paper()
newPaper.id = entry.id.string
newPaper.updatedTime = entry.updated.string
newPaper.publishedTime = entry.published.string
newPaper.title = entry.title.string
newPaper.summary = entry.summary.string
authors = entry.find_all('author')
for author in authors:
newPaper.author.append(author.contents[1].string)
categories = entry.find_all('category')
for category in categories:
newPaper.category.append(category.get('term'))
links = entry.find_all('link')
for link in links:
if link.get('title') == 'doi':
newPaper.doiLink = link.get('href')
elif link.get('title') == 'pdf':
newPaper.pdfLink = link.get('href')
else:
newPaper.paperLink = link.get('href')
papers.append(newPaper)
for paper in papers:
for summary in sums:
paper.score += jaro.jaro_winkler_metric(paper.summary, summary)
papers = sorted(papers, key=attrgetter('score'))
if len(papers) > 10:
papers = papers[:10]
res = dict()
res['resCode'] = 200
res['len'] = len(papers)
res['papers'] = []
for paper in papers:
p = dict()
p['author'] = ''
for author in paper.author:
p['author'] += (author+'/')
p['id'] = paper.id
p['updatedTime'] = paper.publishedTime
p['title'] = paper.title
p['summary'] = paper.summary
p['category'] = ''
for category in paper.category:
p['category'] += (category+'/')
p['doiLink'] = paper.doiLink
p['paperLink'] = paper.paperLink
p['pdfLink'] = paper.pdfLink
res['papers'].append(p)
res = json.dumps(res)
return HttpResponse(res)
def jwm(x, y):
return jaro_winkler_metric(unicode(x.lower()), unicode(y.lower()))
def get(folder, host, user, password, database, incremental_ind):
def id_generator(size=25, chars=string.ascii_lowercase + string.digits):
return ''.join(random.choice(chars) for _ in range(size))
punctuation = "( + ) [ ? : ! . ; ] * # % ` ' / _ = -".split()
punctuation.append('"')
###SETUP MAJOR VARS
fdmain = folder+ "/location_disambiguation/"
#need to figure out what this is
#separate first(0) and incremental(1) disambiguations
incremental = incremental_ind
# Step 1
mydb = MySQLdb.connect(host,
user,
password,
database)
cursor = mydb.cursor()
if incremental == 0:
increm = ''
else:
increm = ' AND (location_id is NULL or location_id = "")'
print "Step 1..."
cursor.execute('select distinct country_transformed from rawlocation where country_transformed is not NULL and country_transformed != "" and country_transformed!="s" and country_transformed!="B." and country_transformed!="omitted" '+increm)
countries = [item[0] for item in cursor.fetchall() if item[0] is not None]
print countries
os.makedirs(fdmain)
os.makedirs(fdmain+'uspto_disamb/')
os.makedirs(fdmain+'uspto_disamb_counts/')
os.makedirs(fdmain+'uspto_disamb_v2/')
os.makedirs(fdmain+'uspto_disamb_loc_latlong/')
os.makedirs(fdmain+'uspto_disamb_only_loc/')
for c in countries:
print c
datum = {}
output = open(fdmain+'uspto_disamb/'+c+'.tsv','wb')
output2 = open(fdmain+'uspto_disamb_counts/'+c+'.tsv','wb')
outp = csv.writer(output,delimiter='\t')
outp2 = csv.writer(output2,delimiter='\t')
cursor.execute("select city,state,country_transformed,count(city) from rawlocation where country_transformed = '"+c+"'"+increm+" group by city,state order by count(city) desc")
outp2.writerows(cursor.fetchall())
cursor.execute('select distinct state from rawlocation where country_transformed = "'+c+'"'+increm)
states = [f[0] for f in cursor.fetchall()]
for s in states:
if str(s) == 'None' or str(s)=='NULL':
cursor.execute('select id,city from rawlocation where country_transformed = "'+c+'" and (state is NULL or state="NULL")'+increm)
s = ''
else:
s = re.sub('[\n\t\f\r]+','',s.strip())
cursor.execute('select id,city from rawlocation where country_transformed = "'+c+'" and state ="'+s+'"'+increm)
locs = [list(f) for f in cursor.fetchall()]
for l in locs:
ll = []
for l1 in l:
if l1:
ll.append(re.sub('[\n\t\r\f]+','',l1.strip()))
else:
ll.append('')
outp.writerow(ll+[s,c])
output.close()
output2.close()
print "Step 2..."
fd = fdmain+'uspto_disamb_counts/'
diri = os.listdir(fd)
mastdata = {}
mastdatum = {}
for d in diri:
#this is separate from the forloop below because otherwise places that are in the wrong file break it
mastdata[d.replace('.tsv','')] = {}
mastdatum[d.replace('.tsv','')] = {}
for d in diri:
input = open(fd+d,'rb')
inp = csv.reader(input,delimiter='\t')
try:
head = inp.next()
top = int(head[-1])
except:
pass
num = 1
for i in inp:
num+=1
inp = csv.reader(file(fd+d),delimiter='\t')
for e,i in enumerate(inp):
if e<=int(num/3) and int(i[-1])>int(top/5):
city = unidecode(i[0])
for p in punctuation:
city = city.replace(p,'')
city = re.sub('[0-9]+','',city)
city = re.sub('^\s+','',city)
city = re.sub('\s+$','',city)
city = city.replace(' ','')
state = i[1]
state = re.sub('^\s+','',state)
state = re.sub('\s+$','',state)
country = i[2]
key = id_generator(size=12)
try:
gg = mastdata[country][city.lower()+'_'+state.lower()]
except:
#print len(mastdata[country])
mastdata[country][city.lower()+'_'+state.lower()] = [key,i[0].strip(),i[1].strip(),i[2],int(i[3])]
mastdatum[country][city.lower()] = [key,i[0],i[1].strip(),i[2].strip(),int(i[3])]
input.close()
print "Step 3..."
# Step 3
fd = fdmain+'uspto_disamb/'
diri = os.listdir(fd)
for d in diri:
output = open(fdmain+'uspto_disamb_v2/'+d,'wb')
input = open(fd+d,'rb')
outp = csv.writer(output,delimiter='\t')
inp = csv.reader(input,delimiter='\t')
data = mastdata[d.replace('.tsv','')]
datum = mastdatum[d.replace(".tsv",'')]
secdata = {}
secdatum = {}
for i in inp:
city = unidecode(i[1])
state = i[2]
country = i[3]
for p in punctuation:
city = city.replace(p,'')
city = re.sub('[0-9]+','',city)
city = re.sub('^\s+','',city)
city = re.sub('\s+$','',city)
origcity = city
city = city.replace(' ','')
try:
gg = data[city.lower()+'_'+state.lower()]
outp.writerow(i+gg)
except:
try:
cit = city.lower().split(",")[0]
gg = data[cit.lower()+'_'+state.lower()]
outp.writerow(i+gg)
except:
try:
cit = city.lower().split("/")
for cc in cit:
gg = data[cc.lower()+'_'+state.lower()]
outp.writerow(i+gg)
break
except:
try:
cit = city.lower().split("-")
for cc in cit:
gg = data[cc.lower()+'_'+state.lower()]
outp.writerow(i+gg)
break
except:
try:
cit = city.lower().split("&")[0]
gg = data[cit.lower()+'_'+state.lower()]
outp.writerow(i+gg)
except:
try:
gg = datum[city.lower()]
outp.writerow(i+gg)
except:
try:
howdy = 0
for k,v in data.items():
dist = jaro.jaro_winkler_metric((city.lower()+'_'+state.lower()).decode('utf-8','ignore'),k.decode('utf-8','ignore'))
edit = nltk.edit_distance(city.lower()+'_'+state.lower(),k)
if (re.search(k.split("_")[0],city.lower()) and k.split("_")[0]!='') or dist >= 0.95 or (edit==2 and len(city.lower())>5):
outp.writerow(i+v)
howdy = 1
break
gg = datum[city]
except:
if howdy == 0:
cit = [cc for cc in origcity.lower().split(" ") if len(cc) > 4]
howdy2 = 0
for cc in cit:
try:
gg = datum[cc]
outp.writerow(i+gg)
howdy2 = 1
break
except:
pass
if howdy2 == 0:
try:
gg = secdata[city.lower()+'_'+state.lower()]
outp.writerow(i+gg)
except:
try:
cit = city.lower().split(",")[0]
gg = secdata[cit.lower()+'_'+state.lower()]
outp.writerow(i+gg)
except:
try:
cit = city.lower().split("&")[0]
gg = secdata[cit.lower()+'_'+state.lower()]
outp.writerow(i+gg)
except:
try:
gg = secdatum[city.lower()]
outp.writerow(i+gg)
except:
try:
howdy = 0
gg = datum[city]
except:
if howdy == 0:
cit = [cc for cc in origcity.lower().split(" ") if len(cc) > 4]
howdy2 = 0
for cc in cit:
try:
gg = secdatum[cc]
outp.writerow(i+gg)
howdy2 = 1
break
except:
pass
if howdy2 == 0:
key = id_generator(size=12)
secdata[city.lower()+'_'+state.lower()] = [key,i[1],i[2],i[3]]
secdatum[city.lower()] = [key,i[1],i[2],i[3]]
outp.writerow(i+[key,i[1],i[2],i[3]])
input.close()
output.close()
print "Step 4..."
#Step 4
fd = fdmain+'uspto_disamb_v2/'
fd3 = fdmain+'uspto_disamb_only_loc/'
diri = os.listdir(fd)
for d in diri:
input = open(fd+d,'rb')
output = open(fd3+d,'wb')
inp = csv.reader(input,delimiter='\t')
outp2 = csv.writer(output,delimiter='\t')
data = {}
final = {}
disamb = {}
for i in inp:
try:
gg = data[' '.join(i[5:])]
final[i[0]] = i[:4]+[gg]+i[5:]
except:
try:
data[' '.join(i[5:])] = i[4]
final[i[0]] = i
disamb[i[4]] = i[4:]
except:
print d,i
input.close()
for k,v in disamb.items():
if len(v) == 5:
v = v[:-1]
outp2.writerow(v)
output.close()
#exit()
print "Done Step 1 - 4"