def run_script(script_name, args, env_file):
'''Setup environment and run script for an arbitrary backend.
Knowledge of environment is required.'''
script = file(env_file, 'r').read()
script += '\n' # Just in case no eof
script += 'python %s ' % script_name
script += ' '.join(str(a) for a in args)
# As long as the python command is the final one, the exception raising should work!
job_tools.execute_complex(script, os.getcwd(), True, True)
def run_script(script_name, args, env_file):
'''Setup environment and run script for an arbitrary backend.
Knowledge of environment is required.'''
script = file(env_file, 'r').read()
script += '\n' # Just in case no eof
script += 'python %s ' % script_name
script += ' '.join(str(a) for a in args)
# As long as the python command is the final one, the exception raising should work!
job_tools.execute_complex(script, os.getcwd(), True, True)
def run_script_wg(script_name, args):
'''Setup environment and run script on WG worker node.'''
script = 'module load application/python/2.7.3 \n'
# Unsure if any of these are still required
script += 'source /opt/exp_software/atlas.glite/setup_WN.sh \n'
script += 'export LFC_HOST=lfc.gridpp.rl.ac.uk \n'
script += 'export MYPROXY_SERVER=myproxy.westgrid.ca \n'
script += 'python %s ' % script_name
script += ' '.join(str(a) for a in args)
# As long as the python command is the final one, the exception raising should work!
job_tools.execute_complex(script, os.getcwd(), True)
def run_script_wg(script_name, args):
'''Setup environment and run script on WG worker node.'''
script = 'module load application/python/2.7.3 \n'
# Unsure if any of these are still required
script += 'source /opt/exp_software/atlas.glite/setup_WN.sh \n'
script += 'export LFC_HOST=lfc.gridpp.rl.ac.uk \n'
script += 'export MYPROXY_SERVER=myproxy.westgrid.ca \n'
script += 'python %s ' % script_name
script += ' '.join(str(a) for a in args)
# As long as the python command is the final one, the exception raising should work!
job_tools.execute_complex(script, os.getcwd(), True)
def run_script_lcg(script_name, args):
'''Setup environment and run script on LCG worker node.'''
version = check_el_version()
# Only needed if CVMFS software is being used
script = 'source $VO_SNOPLUS_SNOLAB_CA_SW_DIR/sl' + str(version) + '/env_cvmfs.sh\n'
# hack on next line; uncomment for sites where VO_SNOPLUS_SNOLAB_CA_SW_DIR does not point to cvmfs
# script = 'source /cvmfs/snoplus.gridpp.ac.uk/sl' + str(version) + '/env_cvmfs.sh\n'
script += 'python %s ' % script_name
script += ' '.join(str(a) for a in args)
# As long as the python command is the final one, the exception raising should work!
job_tools.execute_complex(script, os.getcwd(), True)
def run_script_lcg(script_name, args):
'''Setup environment and run script on LCG worker node.'''
version = check_el_version()
# Only needed if CVMFS software is being used
script = 'source $VO_SNOPLUS_SNOLAB_CA_SW_DIR/sl' + str(
version) + '/env_cvmfs.sh\n'
# hack on next line; uncomment for sites where VO_SNOPLUS_SNOLAB_CA_SW_DIR does not point to cvmfs
# script = 'source /cvmfs/snoplus.gridpp.ac.uk/sl' + str(version) + '/env_cvmfs.sh\n'
script += 'python %s ' % script_name
script += ' '.join(str(a) for a in args)
# As long as the python command is the final one, the exception raising should work!
job_tools.execute_complex(script, os.getcwd(), True)
def compile_rat():
'''Compile local version of RAT'''
temp_file = os.path.join(os.getcwd(), 'installerTemp.sh')
rat_dir = os.path.join(os.getcwd(), 'rat')
command_text = "\
#!/bin/bash\n \
source %s\n \
cd %s\n \
./configure \n \
source env.sh\n \
scons" % (temp_file, rat_dir)
job_tools.execute_complex(command_text)
#running locally, seems rat is not executable by default!
job_tools.execute('chmod', ['u+x', 'rat/bin/rat'])
def compile_rat():
'''Compile local version of RAT'''
temp_file = os.path.join(os.getcwd(), 'installerTemp.sh')
rat_dir = os.path.join(os.getcwd(), 'rat')
command_text = "\
#!/bin/bash\n \
source %s\n \
cd %s\n \
./configure \n \
source env.sh\n \
scons" % (temp_file, rat_dir)
job_tools.execute_complex(command_text)
#running locally, seems rat is not executable by default!
job_tools.execute('chmod', ['u+x', 'rat/bin/rat'])