def saveCurrentFieldValues(args, previous_field_values: Dict,
current_field_values_file_path: str):
""" write the current ui values to prev_run_values_file_path """
field_values = previous_field_values
if args.actions == 'Tracking':
field_values['tracking_video_dir'] = args.tracking_video_dir
field_values[
'tracking_horizontal_contraction_direction'] = args.tracking_horizontal_contraction_direction
field_values[
'tracking_vertical_contraction_direction'] = args.tracking_vertical_contraction_direction
field_values['tracking_template_path'] = args.tracking_template_path
field_values['tracking_output_path'] = args.tracking_output_path
field_values['tracking_output_frames'] = args.tracking_output_frames
field_values[
'tracking_guide_match_search_seconds'] = args.tracking_guide_match_search_seconds
field_values[
'tracking_max_translation_per_frame'] = args.tracking_max_translation_per_frame
field_values[
'tracking_max_rotation_per_frame'] = args.tracking_max_rotation_per_frame
field_values[
'tracking_output_conversion_factor'] = args.tracking_output_conversion_factor
field_values[
'tracking_microns_per_pixel'] = args.tracking_microns_per_pixel
field_values[
'tracking_sub_pixel_search_increment'] = args.tracking_sub_pixel_search_increment
field_values[
'tracking_sub_pixel_refinement_radius'] = args.tracking_sub_pixel_refinement_radius
elif args.actions == 'Morphology':
field_values[
'morphology_search_image_path'] = args.morphology_search_image_path
field_values[
'morphology_left_template_image_path'] = args.morphology_left_template_image_path
field_values[
'morphology_right_template_image_path'] = args.morphology_right_template_image_path
field_values[
'morphology_template_refinement_radius'] = args.morphology_template_refinement_radius
field_values[
'morphology_edge_finding_smoothing_radius'] = args.morphology_edge_finding_smoothing_radius
field_values[
'morphology_microns_per_pixel'] = args.morphology_microns_per_pixel
field_values[
'morphology_sub_pixel_search_increment'] = args.morphology_sub_pixel_search_increment
field_values[
'morphology_sub_pixel_refinement_radius'] = args.morphology_sub_pixel_refinement_radius
elif args.actions == 'Ca2+_Analysis':
field_values[
'ca2_analysis_path_to_data'] = args.ca2_analysis_path_to_data
field_values[
'ca2_analysis_expected_frequency_hz'] = args.ca2_analysis_expected_frequency_hz
field_values[
'ca2_analysis_save_result_plots'] = args.ca2_analysis_save_result_plots
field_values[
'ca2_analysis_bg_subtraction_method'] = args.ca2_analysis_bg_subtraction_method
with open(current_field_values_file_path, 'w') as outfile:
writeJSON(field_values, outfile, indent=4)
if options.crab:
##########
## CRAB ##
##########
if options.runInteractive:
raise RuntimeError(
"This job cannot be run interactively, but rather by crab. Please call without the '--runInteractive' flag or increase the '--maxEventsInteractive' value."
)
runsAndLumis = [(event.run, event.lumi) for event in eventList]
json = LumiList(lumis=runsAndLumis)
eventsToProcess = '\n'.join(\
sorted( [ "%d:%d" % (event.run, event.event) for event in eventList ] ) )
crabDict = setupCrabDict(options)
json.writeJSON(crabDict['json'])
target = open(crabDict['runEvent'], 'w')
target.write("%s\n" % eventsToProcess)
target.close()
target = open(crabDict['crabcfg'], 'w')
target.write(crabTemplate % crabDict)
target.close
print(
"Please visit CRAB twiki for instructions on how to setup environment for CRAB:\nhttps://twiki.cern.ch/twiki/bin/viewauth/CMS/SWGuideCrab\n"
)
if options.crabCondor:
print(
"You are running on condor. Please make sure you have read instructions on\nhttps://twiki.cern.ch/twiki/bin/view/CMS/CRABonLPCCAF\n"
)
if not os.path.exists('%s/.profile' % os.environ.get('HOME')):
print(
if len (eventList) > options.maxEventsInteractive:
options.crab = True
if options.crab:
##########
## CRAB ##
##########
if options.runInteractive:
raise RuntimeError("This job cannot be run interactively, but rather by crab. Please call without the '--runInteractive' flag or increase the '--maxEventsInteractive' value.")
runsAndLumis = [ (event.run, event.lumi) for event in eventList]
json = LumiList (lumis = runsAndLumis)
eventsToProcess = '\n'.join(\
sorted( [ "%d:%d" % (event.run, event.event) for event in eventList ] ) )
crabDict = setupCrabDict (options)
json.writeJSON (crabDict['json'])
target = open (crabDict['runEvent'], 'w')
target.write ("%s\n" % eventsToProcess)
target.close()
target = open (crabDict['crabcfg'], 'w')
target.write (crabTemplate % crabDict)
target.close
print "Please visit CRAB twiki for instructions on how to setup environment for CRAB:\nhttps://twiki.cern.ch/twiki/bin/viewauth/CMS/SWGuideCrab\n"
if options.crabCondor:
print "You are running on condor. Please make sure you have read instructions on\nhttps://twiki.cern.ch/twiki/bin/view/CMS/CRABonLPCCAF\n"
if not os.path.exists ('%s/.profile' % os.environ.get('HOME')):
print "** WARNING: ** You are missing ~/.profile file. Please see CRABonLPCCAF instructions above.\n"
print "Setup your environment for CRAB and edit %(crabcfg)s to make any desired changed. Then run:\n\ncrab submit -c %(crabcfg)s\n" % crabDict
else:
def ensureDefaultFieldValuesExist(prev_run_values_file_path: str):
if Path(prev_run_values_file_path).is_file():
return
with open(prev_run_values_file_path, 'w') as outfile:
writeJSON(defaultFieldValues(), outfile, indent=4)
if len(eventList) > options.maxEventsInteractive:
options.crab = True
if options.crab:
##########
## CRAB ##
##########
if options.runInteractive:
raise RuntimeError, "This job cannot be run interactively, but rather by crab. Please call without the '--runInteractive' flag or increase the '--maxEventsInteractive' value."
runsAndLumis = [(event.run, event.lumi) for event in eventList]
json = LumiList(lumis=runsAndLumis)
eventsToProcess = "\n".join(sorted(["%d:%d" % (event.run, event.event) for event in eventList]))
crabDict = setupCrabDict(options)
json.writeJSON(crabDict["json"])
target = open(crabDict["runEvent"], "w")
target.write("%s\n" % eventsToProcess)
target.close()
target = open(crabDict["crabcfg"], "w")
target.write(crabTemplate % crabDict)
target.close
print "Please visit CRAB twiki for instructions on how to setup environment for CRAB:\nhttps://twiki.cern.ch/twiki/bin/viewauth/CMS/SWGuideCrab\n"
if options.crabCondor:
print "You are running on condor. Please make sure you have read instructions on\nhttps://twiki.cern.ch/twiki/bin/view/CMS/CRABonLPCCAF\n"
if not os.path.exists("%s/.profile" % os.environ.get("HOME")):
print "** WARNING: ** You are missing ~/.profile file. Please see CRABonLPCCAF instructions above.\n"
print "Setup your environment for CRAB and edit %(crabcfg)s to make any desired changed. Then run:\n\ncrab submit -c %(crabcfg)s\n" % crabDict
else: