def check_syntax(config, double_validate=True):
"""
check the given configuration against the schema definition
:param config:
:param double_validate: validate invalid syntax a second time with raising exception
:return: True if the syntax is valid, False otherwise
"""
try:
with open(ROOT_SCHEMA, 'r') as f:
schema = json.load(f)
except FileNotFoundError as fnfe:
factory_logger.error(
'JSON root schema could not be found: {}'.format(ROOT_SCHEMA_NAME))
factory_logger.error(fnfe)
sys.exit()
except Exception as e:
factory_logger.error(e)
sys.exit()
# resolver: reference sub-schemas from relative URIs
# -> https://github.com/Julian/jsonschema/issues/313
resolver = RefResolver(base_uri=ROOT_SCHEMA_BASE_URI, referrer=schema)
validator = Validator(schema, resolver=resolver)
is_valid = validator.is_valid(config)
if not is_valid and double_validate:
# if configuration is invalid, run validate to get error message
try:
validator.validate(config)
except jsonschema.exceptions.ValidationError as err:
factory_logger.error(err)
return is_valid
def load(self, filename: str, use=None, encoding="utf-8"):
path = Path(filename)
if use is not None:
load = use
else:
if path.suffix[1:] not in self.formats:
print(path.suffix[1:])
raise ValueError(
"Don't know how to load this file extension: {!r}".format(
path.suffix))
else:
load = self.formats[path.suffix[1:]]
with path.open(encoding=encoding) as fp:
instance = load(fp)
resolver = RefResolver(
self.id,
self.definition,
{sch.id: sch.definition
for sch in self.directory.schemas()},
)
validator = Validator(self.definition, resolver=resolver)
validator.validate(instance)
return instance
def _validate(validator: jsonschema.Draft7Validator,
entity: Mapping[str, Any]) -> bool:
"""
Determine whether a given entity is valid based on its JSON schema.
:param input: A dict representing a PyBEL entity.
:return: if the input is valid
"""
try:
validator.validate(entity)
return True
except jsonschema.exceptions.ValidationError as err:
logger.info(err)
return False
def run_test(val: Draft7Validator, test: TestSchema):
logger.info(test.description)
print()
expected = test.valid
try:
val.validate(test.data)
if expected is False:
logger.error("Test passed when it shouldn't")
else:
logger.success("Test succeeded")
except Exception as e:
if expected is True:
logger.error("Test didn't pass when it should")
logger.exception(e)
else:
logger.success("Test succeeded")
def test_tuple(validator: Draft7Validator):
validator.validate({'type': 'tuple', 'element_types': [{'type': 'float'}]})
def test_files(validator: Draft7Validator):
# Valid Schemas
validator.validate({'type': 'file'})
validator.validate({'type': 'file', 'file_types': ['text/csv']})
validator.validate({'type': 'list', 'item_type': {'type': 'file'}})
validator.validate({
'type': 'list',
'item_type': {
'type': 'file',
'file_types': ['test/csv']
}
})
validator.validate({
'type':
'tuple',
'element_types': [{
'type': 'file',
'file_types': ['test/csv']
}, {
'type': 'list',
'item_type': {
'type': 'file'
}
}]
})
# Invalid schema: List of list of files
with pytest.raises(ValidationError):
validator.validate({
'type': 'list',
'item_type': {
'type': 'list',
'item_type': {
'type': 'file'
}
}
})
# Invalid schema: Non-list collection of files
with pytest.raises(ValidationError):
validator.validate({
'type': 'dict',
'properties': {
"a": {
'type': 'files'
}
}
})
