Python CovariateData示例

示例#1

文件： test_covariate.py 项目： adamjorr/kbbq-py

def test_covariatedata_consume_read(exreaddata):
    test = covariate.CovariateData()
    test.consume_read(exreaddata)
    assert test.qcov.rgcov[0] == (1, 2)
    assert test.qcov[0, 10] == (1, 1)
    assert test.cyclecov[0, 6, 0] == (0, 1)
    assert test.dinuccov[0, 10, 1] == (1, 1)

示例#2

文件： test_covariate.py 项目： adamjorr/kbbq-py

def test_covariatedata_get_num_dinucs():
    test = covariate.CovariateData()
    assert test.get_num_dinucs() == 16

示例#3

文件： test_covariate.py 项目： adamjorr/kbbq-py

def test_covariatedata_get_num_cycles():
    test = covariate.CovariateData()
    assert test.get_num_cycles() == 0

示例#4

文件： test_covariate.py 项目： adamjorr/kbbq-py

def test_covariatedata_init():
    test = covariate.CovariateData()
    assert test.qcov.shape() == (0, 0)
    assert test.cyclecov.shape() == (0, 0, 0)
    assert test.dinuccov.shape() == (0, 0, 16)