def test_gpi_to_gene_node(self):
gpi_iter = _gpi12iterator(self.gpi_fh)
item = next(gpi_iter)
node = self.sc2ga.gpi_to_gene_node_data(item)
self.assertEqual(len(self.sc2ga.node_header), len(node))
self.assertEqual(node,
['UniProtKB:P0DTD2', 'Protein 9b', 'biolink:Protein', '', 'NCBITaxon:2697049', 'sars_cov_2_gene_annot'])
def test_gpi_parsing(self):
count: int = 0
with open(self.gpi_file, 'r') as gpi_fh:
for rec in _gpi12iterator(gpi_fh):
count += 1
self.assertEqual(self.expected_sars_cov2_genes, count)
def test_gpi12iterator_instance(self, key, value):
gpi_iter = _gpi12iterator(self.gpi_fh)
item = next(gpi_iter)
self.assertTrue(key in item)
self.assertEqual(value, item[key])
def test_gpi12iterator_instance(self):
gpi_iter = _gpi12iterator(self.gpi_fh)
self.assertTrue(isinstance(gpi_iter, Iterable))
