def crop_layer(self):
from lasagne.layers.merge import ElemwiseSumLayer
l1 = Mock(output_shapes=((None, None), ))
l2 = Mock(output_shapes=((None, None), ))
return ElemwiseSumLayer((l1, l2),
coeffs=[2, -1],
cropping=['lower'] * 2)
def test_broadcasting_pattern(self):
from lasagne.layers import ElemwiseSumLayer, InputLayer
import lasagne
import theano.tensor as T
import numpy as np
import theano
a, b = T.matrices('a', 'b')
a_ = np.ones((2, 1), dtype=theano.config.floatX)
b_ = np.ones((2, 5), dtype=theano.config.floatX)
l_a = InputLayer((2, 1))
l_b = InputLayer((2, 5))
l_o = ElemwiseSumLayer([l_a, l_b])
shp = l_o.output_shape # set broadcastable table
output = lasagne.layers.get_output(l_o, {
l_a: a,
l_b: b
}).eval({
a: a_,
b: b_
})
np.testing.assert_array_almost_equal(output, np.ones((2, 5)) + 1.0)
assert shp == output.shape
# test that None dimensions are not modified
l_a = InputLayer((2, None))
l_b = InputLayer((2, None))
l_o = ElemwiseSumLayer([l_a, l_b])
shp = l_o.output_shape # set broadcastable table
a = T.addbroadcast(a, 1)
output = lasagne.layers.get_output(l_o, {
l_a: a,
l_b: b
}).eval({
a: a_,
b: b_
})
np.testing.assert_array_almost_equal(output, np.ones((2, 5)) + 1.0)
assert shp == (2, None)
def get_rnn_unit(l_in,
mask,
rev_mask,
state,
rev_state,
n_units,
prefix,
grad_clip=0,
context=None,
attention=False):
net = OrderedDict()
hid = state
rg = Gate(W_in=input, W_hid=inner, W_cell=None)
ug = Gate(W_in=input, W_hid=inner, W_cell=None)
hg = Gate(W_in=input, W_hid=inner, W_cell=None, nonlinearity=tanh)
net[prefix + 'gru'] = GRULayer(l_in,
num_units=n_units,
resetgate=rg,
updategate=ug,
hidden_update=hg,
mask_input=mask,
hid_init=hid,
learn_init=False,
only_return_final=False,
grad_clipping=grad_clip,
context_input=context,
use_attention=attention,
name='gru')
if rev_mask is not None and rev_state is not None:
net[prefix + 'gru_rev'] = GRULayer(l_in,
num_units=n_units,
resetgate=rg,
updategate=ug,
hidden_update=hg,
mask_input=rev_mask,
hid_init=rev_state,
only_return_final=False,
learn_init=False,
grad_clipping=grad_clip,
context_input=context,
backwards=True,
name='gru_rev')
net['context'] = ElemwiseSumLayer(net.values()[-2:], name='context')
return net
def create_blstm(input_vars, mask_vars, num_inputs, depth, hidden_layer_size,
num_outputs):
network = lasagne.layers.InputLayer(shape=(None, 1, 1, num_inputs),
input_var=input_vars)
mask = InputLayer((None, None), mask_vars)
network = GaussianNoiseLayer(network, sigma=0.01)
for i in range(depth):
forward = LSTMLayer(network,
hidden_layer_size,
mask_input=mask,
learn_init=True)
backward = LSTMLayer(network,
hidden_layer_size,
mask_input=mask,
learn_init=True,
backwards=True)
network = ElemwiseSumLayer([forward, backward])
network = ReshapeLayer(network, (-1, hidden_layer_size))
network = DenseLayer(network, num_outputs, nonlinearity=softmax)
return network
def test_bad_coeffs_fails(self, layer):
from lasagne.layers.merge import ElemwiseSumLayer
with pytest.raises(ValueError):
ElemwiseSumLayer([Mock(), Mock()], coeffs=[2, 3, -1])
def crop_layer(self):
from lasagne.layers.merge import ElemwiseSumLayer
return ElemwiseSumLayer([Mock(), Mock()], coeffs=[2, -1],
cropping=['lower'] * 2)
def layer(self):
from lasagne.layers.merge import ElemwiseSumLayer
return ElemwiseSumLayer([Mock(), Mock()], coeffs=[2, -1])
def test_bad_coeffs_fails(self, layer):
from lasagne.layers.merge import ElemwiseSumLayer
with pytest.raises(ValueError):
l1 = Mock(output_shapes=((None, None), ))
l2 = Mock(output_shapes=((None, None), ))
ElemwiseSumLayer((l1, l2), coeffs=[2, 3, -1])
def residual_block(
l,
batch_norm_alpha,
batch_norm_epsilon,
nonlinearity,
survival_prob,
add_after_nonlin,
reduction_method,
reduction_pool_mode,
increase_units_factor=None,
half_time=False,
projection=False,
):
assert survival_prob <= 1 and survival_prob >= 0
input_num_filters = l.output_shape[1]
if increase_units_factor is not None:
out_num_filters = int(input_num_filters * increase_units_factor)
assert (out_num_filters - input_num_filters) % 2 == 0, (
"Need even "
"number of extra channels in order to be able to pad correctly")
else:
out_num_filters = input_num_filters
if (not half_time) or (reduction_method == 'conv'):
stack_1 = batch_norm(Conv2DLayer(l,
num_filters=out_num_filters,
filter_size=(3, 3),
stride=(1, 1),
nonlinearity=nonlinearity,
pad='same',
W=lasagne.init.HeNormal(gain='relu')),
epsilon=batch_norm_epsilon,
alpha=batch_norm_alpha)
else:
assert half_time and reduction_method == 'pool'
stack_1 = Pool2DLayer(l,
pool_size=(3, 1),
stride=(1, 1),
pad=(1, 0),
mode=reduction_pool_mode)
# 1x1 conv here, therefore can do stride later without problems
# otherwise would have to do stride here before
# and make extra if condition later (only reshape with stride
# in case of reduction method conv)...
stack_1 = batch_norm(Conv2DLayer(stack_1,
num_filters=out_num_filters,
filter_size=(1, 1),
stride=(1, 1),
nonlinearity=nonlinearity,
pad='same',
W=lasagne.init.HeNormal(gain='relu')),
epsilon=batch_norm_epsilon,
alpha=batch_norm_alpha)
if half_time:
stack_1 = StrideReshapeLayer(stack_1, n_stride=2)
stack_2 = batch_norm(Conv2DLayer(stack_1,
num_filters=out_num_filters,
filter_size=(3, 3),
stride=(1, 1),
nonlinearity=None,
pad='same',
W=lasagne.init.HeNormal(gain='relu')),
epsilon=batch_norm_epsilon,
alpha=batch_norm_alpha)
# add shortcut connections
shortcut = l
if half_time:
# note since we are only reshaping
# this is ok both for later identity and later projection
# 1x1 conv of projection is same if we do it before or after this reshape
# (would not be true if it was anything but 1x1 conv(!))
shortcut = StrideReshapeLayer(shortcut, n_stride=2)
if increase_units_factor is not None:
if projection:
# projection shortcut, as option B in paper
shortcut = batch_norm(Conv2DLayer(shortcut,
num_filters=out_num_filters,
filter_size=(1, 1),
stride=(1, 1),
nonlinearity=None,
pad='same',
b=None),
epsilon=batch_norm_epsilon,
alpha=batch_norm_alpha)
else:
# identity shortcut, as option A in paper
n_extra_chans = out_num_filters - input_num_filters
shortcut = PadLayer(shortcut, [n_extra_chans // 2, 0, 0],
batch_ndim=1)
if add_after_nonlin:
stack_2 = NonlinearityLayer(stack_2)
block = ElemwiseSumLayer([stack_2, shortcut])
else:
block = NonlinearityLayer(ElemwiseSumLayer([stack_2, shortcut]),
nonlinearity=nonlinearity)
if survival_prob != 1:
# Hack to make both be broadcastable along empty third dim
# Otherwise I get an error that they are of different type:
# shortcut: TensorType(False,False,False,True)
# block: TensorType4d(32) or sth
shortcut = ExpressionLayer(shortcut, lambda x: T.addbroadcast(x, 3))
block = ExpressionLayer(block, lambda x: T.addbroadcast(x, 3))
block = RandomSwitchLayer(block, shortcut, survival_prob)
return block