def _h5N5FindCommonInternal(h5N5Files):
"""
Tries to find common internal path (containing data)
Method is used, when a directory is selected and the internal path is,
thus, unclear.
Args:
h5Files or hń5Files (list of strings): h5 or n5 files to be globbed internally
Returns:
list of internal paths
"""
h5 = OpStreamingH5N5Reader.get_h5_n5_file(h5N5Files[0], mode='r')
internal_paths = set([x['name'] for x in lsH5N5(h5, minShape=2)])
h5.close()
for h5N5File in h5N5Files[1::]:
h5 = OpStreamingH5N5Reader.get_h5_n5_file(h5N5File, 'r')
# get all files with with at least 2D shape
tmp = set([x['name'] for x in lsH5N5(h5, minShape=2)])
internal_paths = internal_paths.intersection(tmp)
return list(internal_paths)
def _h5N5FindCommonInternal(h5N5Files):
"""
Tries to find common internal path (containing data)
Method is used, when a directory is selected and the internal path is,
thus, unclear.
Args:
h5Files or hń5Files (list of strings): h5 or n5 files to be globbed internally
Returns:
list of internal paths
"""
h5 = OpStreamingH5N5Reader.get_h5_n5_file(h5N5Files[0], mode='r')
internal_paths = set([x['name'] for x in lsH5N5(h5, minShape=2)])
h5.close()
for h5N5File in h5N5Files[1::]:
h5 = OpStreamingH5N5Reader.get_h5_n5_file(h5N5File, 'r')
# get all files with with at least 2D shape
tmp = set([x['name'] for x in lsH5N5(h5, minShape=2)])
internal_paths = internal_paths.intersection(tmp)
return list(internal_paths)
def _findInternalStacks(h5N5File):
"""
Tries to find common internal path (containing data)
Method is used, when a directory is selected and the internal path is,
thus, unclear.
Args:
h5file or n5file (list of strings): h5 or n5 files to be globbed internally
Returns:
list of internal stacks
"""
pathComponents = PathComponents(h5N5File)
if pathComponents.extension in (OpStreamingH5N5SequenceReaderM.H5EXTS + OpStreamingH5N5SequenceReaderM.N5EXTS):
# get all internal paths
with OpStreamingH5N5Reader.get_h5_n5_file(h5N5File, mode='r') as h5:
internal_paths = lsH5N5(h5, minShape=2)
return [x['name'] for x in internal_paths]
def _findInternalStacks(h5N5File):
"""
Tries to find common internal path (containing data)
Method is used, when a directory is selected and the internal path is,
thus, unclear.
Args:
h5file or n5file (list of strings): h5 or n5 files to be globbed internally
Returns:
list of internal stacks
"""
pathComponents = PathComponents(h5N5File)
if pathComponents.extension in (OpStreamingH5N5SequenceReaderM.H5EXTS +
OpStreamingH5N5SequenceReaderM.N5EXTS):
# get all internal paths
with OpStreamingH5N5Reader.get_h5_n5_file(h5N5File,
mode='r') as h5:
internal_paths = lsH5N5(h5, minShape=2)
return [x['name'] for x in internal_paths]