def __init__(self, logger=None): cfg.configure(self) self.logger = logger
def __init__(self, logger=None): cfg.configure(self) self.logger = logger self.pg = PG() self.pg.connect(self.pg_db, self.pg_user, self.pg_password, self.pg_host)
help="Minimum b.p. entropy to accept candidate.") parser.add_option("--filter-code", action="store", dest="filter_code", default=None, type="string", help="Name of a file containing a filtering expression.") (options, args) = parser.parse_args() # # Configure and initialize the search class # config.data_path = options.data_path config.configure() # # Read the data from the results file # (seqs, cands, constraint, seq_count, tries) = results.Results.load(options.in_file, config.models) # # Output # # standard filter code if (options.filter_code is None): filter_code = "ok = (count >= %d and " % options.min_count filter_code += "occur >= %f and " % options.min_occur
def __init__(self, logger=None): cfg.configure(self) self.logger = logger self.pg = PG() self.pg.connect(self.pg_db, self.pg_user, self.pg_password, self.pg_host)
def __init__(self, logger=None): cfg.configure(self) self.logger = logger