def __init__(self, logger=None): cfg.configure(self) self.logger = logger
def __init__(self, logger=None): cfg.configure(self) self.logger = logger self.pg = PG() self.pg.connect(self.pg_db, self.pg_user, self.pg_password, self.pg_host)
help="Minimum b.p. entropy to accept candidate.")
parser.add_option("--filter-code",
action="store",
dest="filter_code",
default=None,
type="string",
help="Name of a file containing a filtering expression.")
(options, args) = parser.parse_args()
#
# Configure and initialize the search class
#
config.data_path = options.data_path
config.configure()
#
# Read the data from the results file
#
(seqs, cands, constraint, seq_count,
tries) = results.Results.load(options.in_file, config.models)
#
# Output
#
# standard filter code
if (options.filter_code is None):
filter_code = "ok = (count >= %d and " % options.min_count
filter_code += "occur >= %f and " % options.min_occur
def __init__(self, logger=None): cfg.configure(self) self.logger = logger self.pg = PG() self.pg.connect(self.pg_db, self.pg_user, self.pg_password, self.pg_host)
def __init__(self, logger=None):
cfg.configure(self)
self.logger = logger