quantifer = "small"
#Score matrix inits
crissCrossRecord=open(f"crissCross {quantifer}", "r")
sMs=[]
for line in crissCrossRecord:
line=line.split(":")[2][:-2]
sMs.append(libFBCAGen.convTextListToList(line))
## MAIN ##
# Generates the images for the vertexs
libFBCAGen.finalImage=1 #generate final level map?
libFBCAGen.useImages=1 #generate gifs?
for n in range(0,len(sMs)):
libFBCAGen.generateFBCA(sMs[n],d,CAMapInit,str(n)) #Generate the final L_g
libFBCAGen.finalImage=0 #generate final level map?
libFBCAGen.useImages=0 #generate gifs?
# Then lets generate their morphs
for n in range(0,len(sMs)-1): #Incase we have multiple matrices we want to morph between
for m in range(n+1,len(sMs)):
behaviours=[]
fPs=[]
quantifer = f"fMorph ({n},{m}) - {quantiferRead}"
l=0
for x in numpy.arange(0,1+1e-8,float(1/morphRes)): #In this loop we generate all the L_gs for the morph
sMCur = libFBCAGen.genMorphSM(sMs[n],sMs[m],x) #gets score matrix for this point in the morph
fPs.append(fPrint())
fPs[len(fPs)-1].fP = libFBCAGen.genFingerPrint(sMCur) #gets the FP
libFBCAGen.CALength = 20 #Length of the generated image (for min use 5)
libFBCAGen.CAWidth = 20 #Width of the generated image (for min use 4)
libFBCAGen.useImages = 1 #checks if you want images This is annoying
libFBCAGen.numOfGens = 20 #number of generations
libFBCAGen.numOfStates = 2 #number of states (good until 10)
smallDelta = 1e-6
CAMapInit = []
borderLambdas = []
CAMapInit = libFBCAGen.initCA(CAMapInit)
##START
edgeRecord = open("morphEdges", "r")
#loops through files
for line in edgeRecord:
splits = []
sM1 = []
sM2 = []
lambdas = []
levelMap = []
splits = line.split("sMs")
lambdas = convTextListToList(splits[0])
sM1 = convTextListToList(splits[1])
sM2 = convTextListToList(splits[2])
for lamb in lambdas:
sMCur = libFBCAGen.genMorphSM(sM1, sM2, lamb + smallDelta)
levelMap = libFBCAGen.generateFBCA(sMCur, d, CAMapInit,
str(lamb + smallDelta))
sMCur = libFBCAGen.genMorphSM(sM1, sM2, lamb - smallDelta)
levelMap = libFBCAGen.generateFBCA(sMCur, d, CAMapInit,
str(lamb - smallDelta))
libFBCAGen.useImages = 1 #generate gifs?
libFBCAGen.finalImage = 1 #generate final level map?
libFBCAGen.numOfGens = 20 #number of generations
libFBCAGen.random.seed(1) #set to 1 for constant
d = []
d = os.getcwd() + "/" #Get directory
#Score matrix inits
sM1 = [0.320205, 0.952292, 0.351335, 0.837774]
sM2 = [0.390741, 0.728013, 0.614486, 0.378596]
sMs = [sM1, sM2]
#generate first guys
libFBCAGen.numOfStates = int(len(sM1) / 2)
CAMapInit = []
CAMapInit = libFBCAGen.initCA(CAMapInit) #Get L_0
for idx, curSM in enumerate(sMs):
libFBCAGen.generateFBCA(curSM, d, CAMapInit,
str(idx)) #Generate the final L_g
#get ready for the increased dim
libFBCAGen.numOfStates = len(
sM1
) #number of states (its assumed the set of score matrices given are all the same dimension)
numOfSpots = len(sM1)
numOfStates = len(sMs)
quantifer = "test"
CAMapInit = []
CAMapInit = libFBCAGen.initCA(CAMapInit) #Get L_0
# Generates crisscrossed matrices #
### Input: the score matrices used to crissCross, the configuration of score matrices, the iteration number,
### Output: a 2*n number of state score matrix crissCrossed
# Notes:
import FBCAConsts import libFBCAGen # generate a text file exFBCA = FBCAConsts.Fbca() exFBCA.scoreMatrix = [0, 0.5, 0.2, 0.6] exFBCA.levelMap = libFBCAGen.initCA(exFBCA) exFBCA.g = 6 libFBCAGen.genText(exFBCA, fileName="readTextExample.txt") # read from text fileToReadFrom = "readTextExample.txt" listOfFBCAs = libFBCAGen.readFBCA(fileToReadFrom) print(listOfFBCAs[0].g) print(listOfFBCAs[0].n) print(listOfFBCAs[0].torusWidth) print(listOfFBCAs[0].torusLength) print(listOfFBCAs[0].scoreMatrix) print(listOfFBCAs[0].neighbourhood) libFBCAGen.generateFBCA(exFBCA, quantifer="/original", saveImages=True) libFBCAGen.generateFBCA(listOfFBCAs[0], quantifer="/new", saveImages=True)
quantifer = "halfBig"
#Score matrix inits
crissCrossRecord=open(f"crissCross {quantifer}", "r")
sMs=[]
for line in crissCrossRecord:
line=line.split(":")[2][:-2]
sMs.append(libFBCAGen.convTextListToList(line))
## MAIN ##
# Generates the images for the vertexs
libFBCAGen.finalImage=1 #generate final level map?
libFBCAGen.useImages=1 #generate gifs?
for n in range(0,len(sMs)):
libFBCAGen.generateFBCA(sMs[n],d,CAMapInit,str(n)) #Generate the final L_g
libFBCAGen.finalImage=0 #generate final level map?
libFBCAGen.useImages=0 #generate gifs?
# Figures out how many finger prints per morph
# Then lets generate their morphs and resulting fingerprints
fPs=[]
for n in range(0,len(sMs)-1): #Incase we have multiple matrices we want to morph between
for m in range(n+1,len(sMs)):
quantifer = f"fMorph ({n},{m}) - {quantiferRead}"
l=0
for x in numpy.arange(0,1+1e-8,float(1/morphRes)): #In this loop we generate all the L_gs for the morph
sMCur = libFBCAGen.genMorphSM(sMs[n],sMs[m],x) #gets score matrix for this point in the morph
fPs.append(fPrint())
fPs[len(fPs)-1].fP = libFBCAGen.genFingerPrint(sMCur) #gets the FP
libFBCAGen.finalImage = 0 #Keep 0
libFBCAGen.numOfGens = 20 #number of generations
libFBCAGen.numOfStates = 2 #number of states (good until 10)
## BORING INITS
d = []
d = os.getcwd() + "/"
curSide = ["Left", "Right", "Middle"]
CAMapInit = []
CAMapInit = libFBCAGen.initCA(CAMapInit)
borderLambdas = []
## MAIN ##
# Generates the inital L_g containers
lGLeft = lGContainer(0, sM1,
libFBCAGen.generateFBCA(sM1, d, CAMapInit, curSide[0]),
curSide[0])
lGRight = lGContainer(1, sM2,
libFBCAGen.generateFBCA(sM2, d, CAMapInit, curSide[1]),
curSide[1])
lGMid = lGContainer(
0.5, libFBCAGen.genMorphSM(sM1, sM2, 0.5),
libFBCAGen.generateFBCA(libFBCAGen.genMorphSM(sM1, sM2, 0.5), d, CAMapInit,
curSide[2]), curSide[2])
direction = 0
lastDifferentLambda = 0
##Goes left to right
for n in range(0, len(sMs)): # because we may have many
if n % 2 == 0:
while (libFBCAGen.compareLs(lGRight, lGLeft) == 0):
d = os.getcwd() + "/"
#defintions for FBCA generation
libFBCAGen.CALength = 20 #Length of the generated image (for min use 5)
libFBCAGen.CAWidth = 20 #Width of the generated image (for min use 4)
libFBCAGen.useImages = 1 #checks if you want images This is annoying
libFBCAGen.numOfGens = 20 #number of generations
libFBCAGen.numOfStates = 2 #number of states (good until 10)
CAMapInit = []
borderLambdas = []
CAMapInit = libFBCAGen.initCA(CAMapInit)
##START
morphRecord = open("morphPortrait record Two at 1000 rand(4)", "r")
#loops through files
sM1 = []
sM2 = []
lambdas = []
levelMap = []
splits = []
for idx, line in enumerate(morphRecord):
if idx == 0:
splits = line.split("sMs")
sM1 = convTextListToList(splits[1])
sM2 = convTextListToList(splits[2])
else:
splits = line.split(" ")
lambdas.append(float(splits[len(splits) - 2]))
for lamb in lambdas:
sMCur = libFBCAGen.genMorphSM(sM1, sM2, lamb)
levelMap = libFBCAGen.generateFBCA(sMCur, d, CAMapInit, str(lamb))
import FBCAConsts
import libFBCAGen
exFBCA = FBCAConsts.Fbca()
exFBCA.scoreMatrix = [0, 0.5, 0.2, 0.6]
exFBCA.levelMap = libFBCAGen.initCA(exFBCA)
exFBCA.g = 6
exFBCA.levelMap = libFBCAGen.generateFBCA(exFBCA,
saveFinalImage=True,
saveImages=True,
saveFinalText=True,
quantifer="generateFBCAExample")