def test_SBMLDocument_clone(self):
o1 = libsbml.SBMLDocument()
o1.setLevelAndVersion(1,1,False)
m = libsbml.Model(1,1)
m.createCompartment()
m.createSpecies()
m.createReaction()
m.setId("foo")
o1.setModel(m)
self.assert_( o1.getLevel() == 1 )
self.assert_( o1.getVersion() == 1 )
self.assert_( o1.getModel().getId() == "foo" )
self.assert_( o1.getModel().getLevel() == 1 )
self.assert_( o1.getModel().getVersion() == 1 )
self.assert_( o1.getModel().getSBMLDocument() == o1 )
o2 = o1.clone()
self.assert_( o2.getLevel() == 1 )
self.assert_( o2.getVersion() == 1 )
self.assert_( o2.getModel().getId() == "foo" )
self.assert_( o2.getModel().getLevel() == 1 )
self.assert_( o2.getModel().getVersion() == 1 )
self.assert_( o2.getModel().getSBMLDocument() == o2 )
o2 = None
o1 = None
pass
def test_Model_addEvent4(self):
m = libsbml.Model(2, 2)
e = libsbml.Event(2, 2)
t = libsbml.Trigger(2, 2)
t.setMath(libsbml.parseFormula("true"))
e.setId("e")
e.setTrigger(t)
e.createEventAssignment()
e1 = libsbml.Event(2, 2)
e1.setId("e")
e1.setTrigger(t)
e1.createEventAssignment()
i = m.addEvent(e)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(m.getNumEvents() == 1)
i = m.addEvent(e1)
self.assert_(i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID)
self.assert_(m.getNumEvents() == 1)
_dummyList = [e]
_dummyList[:] = []
del _dummyList
_dummyList = [e1]
_dummyList[:] = []
del _dummyList
_dummyList = [m]
_dummyList[:] = []
del _dummyList
pass
def test_Model_ancestor_add(self): d = libsbml.SBMLDocument(2,4) m = libsbml.Model(2,4) d.setModel(m) self.assert_( d == d.getModel().getAncestorOfType(libsbml.SBML_DOCUMENT) ) d = None pass
def test_Model_parent_add(self):
d = libsbml.SBMLDocument(2, 4)
m = libsbml.Model(2, 4)
d.setModel(m)
self.assert_(d == d.getModel().getParentSBMLObject())
d = None
pass
def test_L3_Model_createWithNS(self):
xmlns = libsbml.XMLNamespaces()
xmlns.add("http://www.sbml.org", "testsbml")
sbmlns = libsbml.SBMLNamespaces(3, 1)
sbmlns.addNamespaces(xmlns)
m = libsbml.Model(sbmlns)
self.assert_(m.getTypeCode() == libsbml.SBML_MODEL)
self.assert_(m.getMetaId() == "")
self.assert_(m.getNotes() == None)
self.assert_(m.getAnnotation() == None)
self.assert_(m.getLevel() == 3)
self.assert_(m.getVersion() == 1)
self.assert_(m.getNamespaces() != None)
self.assert_(m.getNamespaces().getLength() == 2)
self.assert_(m.getId() == "")
self.assert_(m.getName() == "")
self.assert_(m.getSubstanceUnits() == "")
self.assert_(m.getTimeUnits() == "")
self.assert_(m.getVolumeUnits() == "")
self.assert_(m.getAreaUnits() == "")
self.assert_(m.getLengthUnits() == "")
self.assert_(m.getConversionFactor() == "")
self.assertEqual(False, m.isSetId())
self.assertEqual(False, m.isSetName())
self.assertEqual(False, m.isSetSubstanceUnits())
self.assertEqual(False, m.isSetTimeUnits())
self.assertEqual(False, m.isSetVolumeUnits())
self.assertEqual(False, m.isSetAreaUnits())
self.assertEqual(False, m.isSetLengthUnits())
self.assertEqual(False, m.isSetConversionFactor())
_dummyList = [m]
_dummyList[:] = []
del _dummyList
pass
def test_Model_L1V2(self): m = libsbml.Model(1,2) self.assertEqual( False, (m.hasRequiredElements()) ) m.createCompartment() self.assertEqual( True, m.hasRequiredElements() ) m = None pass
def test_UnitDefinition_parent_create(self):
m = libsbml.Model(2, 4)
ud = m.createUnitDefinition()
lo = m.getListOfUnitDefinitions()
self.assert_(lo == m.getUnitDefinition(0).getParentSBMLObject())
self.assert_(lo == ud.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Constraint_parent_create(self):
m = libsbml.Model(2, 4)
ct = m.createConstraint()
lo = m.getListOfConstraints()
self.assert_(lo == m.getConstraint(0).getParentSBMLObject())
self.assert_(lo == ct.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_CompartmentType_parent_create(self):
m = libsbml.Model(2, 4)
ct = m.createCompartmentType()
lo = m.getListOfCompartmentTypes()
self.assert_(lo == m.getCompartmentType(0).getParentSBMLObject())
self.assert_(lo == ct.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Species_parent_create(self):
m = libsbml.Model(2, 4)
s = m.createSpecies()
lo = m.getListOfSpecies()
self.assert_(lo == s.getParentSBMLObject())
self.assert_(lo == m.getSpecies(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Parameter_parent_create(self):
m = libsbml.Model(2, 4)
p = m.createParameter()
lo = m.getListOfParameters()
self.assert_(lo == m.getParameter(0).getParentSBMLObject())
self.assert_(lo == p.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_KineticLaw_parent_create_model(self):
m = libsbml.Model(2, 4)
r = m.createReaction()
kl = r.createKineticLaw()
self.assert_(r == kl.getParentSBMLObject())
self.assert_(r == r.getKineticLaw().getParentSBMLObject())
r = None
pass
def test_Reaction_parent_create(self):
m = libsbml.Model(2, 4)
r = m.createReaction()
lo = m.getListOfReactions()
self.assert_(lo == m.getReaction(0).getParentSBMLObject())
self.assert_(lo == r.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_AssignmentRule_parent_create(self):
m = libsbml.Model(2, 4)
r = m.createAssignmentRule()
lo = m.getListOfRules()
self.assert_(lo == m.getRule(0).getParentSBMLObject())
self.assert_(lo == r.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_InitialAssignment_parent_create(self):
m = libsbml.Model(2, 4)
ia = m.createInitialAssignment()
lo = m.getListOfInitialAssignments()
self.assert_(lo == m.getInitialAssignment(0).getParentSBMLObject())
self.assert_(lo == ia.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_FunctionDefinition_parent_create(self):
m = libsbml.Model(2, 4)
fd = m.createFunctionDefinition()
lo = m.getListOfFunctionDefinitions()
self.assert_(lo == m.getFunctionDefinition(0).getParentSBMLObject())
self.assert_(lo == fd.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Event_parent_create(self):
m = libsbml.Model(2, 4)
e = m.createEvent()
lo = m.getListOfEvents()
self.assert_(lo == m.getEvent(0).getParentSBMLObject())
self.assert_(lo == e.getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_SpeciesReference_Reactant_parent_create_model(self):
m = libsbml.Model(2, 4)
r = m.createReaction()
sr = m.createReactant()
lo = r.getListOfReactants()
self.assert_(lo == r.getReactant(0).getParentSBMLObject())
self.assert_(lo == sr.getParentSBMLObject())
self.assert_(r == lo.getParentSBMLObject())
pass
def test_EventAssignment_parent_create_model(self):
m = libsbml.Model(2, 4)
e = m.createEvent()
ea = m.createEventAssignment()
lo = e.getListOfEventAssignments()
self.assert_(lo == e.getEventAssignment(0).getParentSBMLObject())
self.assert_(lo == ea.getParentSBMLObject())
self.assert_(e == lo.getParentSBMLObject())
pass
def test_SpeciesType_parent_add(self):
ia = libsbml.SpeciesType(2, 4)
ia.setId("s")
m = libsbml.Model(2, 4)
m.addSpeciesType(ia)
ia = None
lo = m.getListOfSpeciesTypes()
self.assert_(lo == m.getSpeciesType(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Reaction_parent_add(self):
ia = libsbml.Reaction(2, 4)
m = libsbml.Model(2, 4)
ia.setId("k")
m.addReaction(ia)
ia = None
lo = m.getListOfReactions()
self.assert_(lo == m.getReaction(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Model_createCompartmentType(self):
m = libsbml.Model(2, 2)
p = m.createCompartmentType()
self.assert_(m.getNumCompartmentTypes() == 1)
self.assert_((p).getLevel() == 2)
self.assert_((p).getVersion() == 2)
_dummyList = [m]
_dummyList[:] = []
del _dummyList
pass
def test_Constraint_parent_add(self):
ct = libsbml.Constraint(2, 4)
m = libsbml.Model(2, 4)
ct.setMath(libsbml.parseFormula("a-k"))
m.addConstraint(ct)
ct = None
lo = m.getListOfConstraints()
self.assert_(lo == m.getConstraint(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_CompartmentType_parent_add(self):
ct = libsbml.CompartmentType(2, 4)
m = libsbml.Model(2, 4)
ct.setId("ct")
m.addCompartmentType(ct)
ct = None
lo = m.getListOfCompartmentTypes()
self.assert_(lo == m.getCompartmentType(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_SBMLDocument_setModel1(self):
d = libsbml.SBMLDocument(2, 2)
m1 = libsbml.Model(2, 1)
i = d.setModel(m1)
self.assert_(i == libsbml.LIBSBML_VERSION_MISMATCH)
self.assert_(d.getModel() == None)
_dummyList = [d]
_dummyList[:] = []
del _dummyList
pass
def test_Model_createEvent(self):
m = libsbml.Model(2, 2)
p = m.createEvent()
self.assert_(m.getNumEvents() == 1)
self.assert_((p).getLevel() == 2)
self.assert_((p).getVersion() == 2)
_dummyList = [m]
_dummyList[:] = []
del _dummyList
pass
def test_Compartment_parent_add(self):
c = libsbml.Compartment(2, 4)
c.setId("c")
m = libsbml.Model(2, 4)
m.addCompartment(c)
c = None
lo = m.getListOfCompartments()
self.assert_(lo == m.getCompartment(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_Parameter_parent_add(self):
ia = libsbml.Parameter(2, 4)
m = libsbml.Model(2, 4)
ia.setId("p")
m.addParameter(ia)
ia = None
lo = m.getListOfParameters()
self.assert_(lo == m.getParameter(0).getParentSBMLObject())
self.assert_(m == lo.getParentSBMLObject())
pass
def test_SBMLDocument_setModel3(self):
d = libsbml.SBMLDocument(2, 2)
m1 = libsbml.Model(2, 2)
i = d.setModel(m1)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(d.getModel() != None)
_dummyList = [d]
_dummyList[:] = []
del _dummyList
pass
def test_Model_addUnitDefinition4(self):
m = libsbml.Model(2, 2)
ud = None
i = m.addUnitDefinition(ud)
self.assert_(i == libsbml.LIBSBML_OPERATION_FAILED)
self.assert_(m.getNumUnitDefinitions() == 0)
_dummyList = [m]
_dummyList[:] = []
del _dummyList
pass
