class Tests(WithTempDir): def setUp(self): WithTempDir.setUp(self) self.lex = LexStat(test_data('KSL.qlc')) self.part = Partial(test_data('partial_cognates.tsv'), segments='segments') self.part.add_entries('pid1', 'partial_cognate_sets', lambda x: x) self.part.add_entries('pid2', 'partialids2', lambda x: [int(y) for y in x.split(' ')]) def test_bcubes(self): from lingpy.evaluate.acd import bcubes res = bcubes(self.lex, test='cogid', pprint=False) self.assertAlmostEquals(res, (1.0, 1.0, 1.0)) res = bcubes(self.lex, 'cogid', 'cogid', pprint=True, per_concept=True) def test_partial_bcubes(self): from lingpy.evaluate.acd import partial_bcubes res = partial_bcubes(self.part, 'pid1', 'pid2', pprint=False) assert [round(x, 2) for x in res] == [0.92, 0.98, 0.95] res = partial_bcubes(self.part, 'pid1', 'pid2', pprint=True) def test_pairs(self): from lingpy.evaluate.acd import pairs res = pairs(self.lex, test='cogid', pprint=False) self.assertAlmostEquals(res, (1.0, 1.0, 1.0)) def test_diff(self): from lingpy.evaluate.acd import diff res = diff(self.lex, test='cogid', tofile=False, pprint=False) self.assertAlmostEquals(res, ((1.0, 1.0, 1.0), (1.0, 1.0, 1.0))) self.lex.add_entries('cugid', 'cogid', lambda x: x + 1 if x % 2 else x * x) d1 = diff(self.lex, gold='cogid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False) d2 = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=False) d3 = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=True) assert d2[0] != 1
class Tests(WithTempDir): def setUp(self): WithTempDir.setUp(self) self.lex = LexStat(test_data('KSL.qlc')) self.part = Partial(test_data('partial_cognates.tsv'), segments='segments') self.part.add_entries('pid1', 'partial_cognate_sets', lambda x: x) self.part.add_entries('pid2', 'partialids2', lambda x: [int(y) for y in x.split(' ')]) def test_bcubes(self): res = bcubes(self.lex, test='cogid', pprint=False) self.assertAlmostEqual(res, (1.0, 1.0, 1.0)) _ = bcubes(self.lex, 'cogid', 'cogid', pprint=True, per_concept=True) def test_partial_bcubes(self): res = partial_bcubes(self.part, 'pid1', 'pid2', pprint=False) assert [round(x, 2) for x in res] == [0.92, 0.98, 0.95] _ = partial_bcubes(self.part, 'pid1', 'pid2', pprint=True) def test_pairs(self): res = pairs(self.lex, test='cogid', pprint=False) self.assertAlmostEqual(res, (1.0, 1.0, 1.0)) def test_diff(self): res = diff(self.lex, test='cogid', tofile=False, pprint=False) self.assertAlmostEqual(res, ((1.0, 1.0, 1.0), (1.0, 1.0, 1.0))) self.lex.add_entries('cugid', 'cogid', lambda x: x + 1 if x % 2 else x * x) _ = diff(self.lex, gold='cogid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False) d2 = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=False) _ = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=True) assert d2[0] != 1 def test_random_cognates(self): random_cognates(self.lex, ref='randomid') assert 'randomid' in self.lex.header def test_extreme_cognates(self): extreme_cognates(self.lex, ref="lumperid", bias='lumper') assert self.lex[1, 'lumperid'] == self.lex[2, 'lumperid'] extreme_cognates(self.lex, ref='splitterid', bias='splitter') assert self.lex[1, 'splitterid'] != self.lex[2, 'splitterid'] assert_raises(ValueError, extreme_cognates, self.lex, bias='')
class Tests(WithTempDir): def setUp(self): WithTempDir.setUp(self) self.lex = LexStat(test_data('KSL.qlc')) self.part = Partial(test_data('partial_cognates.tsv'), segments='segments') self.part.add_entries('pid1', 'partial_cognate_sets', lambda x: x) self.part.add_entries('pid2', 'partialids2', lambda x: [int(y) for y in x.split(' ')]) def test_bcubes(self): res = bcubes(self.lex, test='cogid', pprint=False) self.assertAlmostEquals(res, (1.0, 1.0, 1.0)) _ = bcubes(self.lex, 'cogid', 'cogid', pprint=True, per_concept=True) def test_partial_bcubes(self): res = partial_bcubes(self.part, 'pid1', 'pid2', pprint=False) assert [round(x, 2) for x in res] == [0.92, 0.98, 0.95] _ = partial_bcubes(self.part, 'pid1', 'pid2', pprint=True) def test_pairs(self): res = pairs(self.lex, test='cogid', pprint=False) self.assertAlmostEquals(res, (1.0, 1.0, 1.0)) def test_diff(self): res = diff(self.lex, test='cogid', tofile=False, pprint=False) self.assertAlmostEquals(res, ((1.0, 1.0, 1.0), (1.0, 1.0, 1.0))) self.lex.add_entries('cugid', 'cogid', lambda x: x + 1 if x % 2 else x * x) _ = diff(self.lex, gold='cogid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False) d2 = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=False) _ = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=True) assert d2[0] != 1 def test_random_cognates(self): random_cognates(self.lex, ref='randomid') assert 'randomid' in self.lex.header def test_extreme_cognates(self): extreme_cognates(self.lex, ref="lumperid", bias='lumper') assert self.lex[1, 'lumperid'] == self.lex[2, 'lumperid'] extreme_cognates(self.lex, ref='splitterid', bias='splitter') assert self.lex[1, 'splitterid'] != self.lex[2, 'splitterid'] assert_raises(ValueError, extreme_cognates, self.lex, bias='')
class Tests(WithTempDir): def setUp(self): WithTempDir.setUp(self) self.lex = LexStat(test_data('KSL.qlc')) self.part = Partial(test_data('partial_cognates.tsv'), segments='segments') self.part.add_entries('pid1', 'partial_cognate_sets', lambda x: x) self.part.add_entries('pid2', 'partialids2', lambda x: [int(y) for y in x.split(' ')]) def test_bcubes(self): from lingpy.evaluate.acd import bcubes res = bcubes(self.lex, test='cogid', pprint=False) self.assertAlmostEquals(res, (1.0, 1.0, 1.0)) res = bcubes(self.lex, 'cogid', 'cogid', pprint=True, per_concept=True) def test_partial_bcubes(self): from lingpy.evaluate.acd import partial_bcubes res = partial_bcubes(self.part, 'pid1', 'pid2', pprint=False) assert [round(x, 2) for x in res] == [0.92, 0.98, 0.95] res = partial_bcubes(self.part, 'pid1', 'pid2', pprint=True) def test_pairs(self): from lingpy.evaluate.acd import pairs res = pairs(self.lex, test='cogid', pprint=False) self.assertAlmostEquals(res, (1.0, 1.0, 1.0)) def test_diff(self): from lingpy.evaluate.acd import diff res = diff(self.lex, test='cogid', tofile=False, pprint=False) self.assertAlmostEquals(res, ((1.0, 1.0, 1.0), (1.0, 1.0, 1.0))) self.lex.add_entries('cugid', 'cogid', lambda x: x+1 if x % 2 else x*x) d1 = diff(self.lex, gold='cogid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False) d2 = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=False) d3 = diff(self.lex, gold='cugid', test='cogid', filename='%s' % self.tmp_path('test_acd'), pprint=False, tofile=True) assert d2[0] != 1