def test_sync_no_mtime_update_when_no_pull(lochness_subject_raw_json):
Lochness, subject, raw_json = lochness_subject_raw_json
sync(Lochness, subject, False)
init_mtime = raw_json.stat().st_mtime
# second sync without update in the db
sync(Lochness, subject, False)
assert init_mtime == raw_json.stat().st_mtime
rmtree('tmp_lochness')
def test_sync_det_update_no_file_leads_to_pull(lochness_subject_raw_json):
Lochness, subject, raw_json = lochness_subject_raw_json
sync(Lochness, subject, False)
init_mtime = raw_json.stat().st_mtime
os.remove(raw_json)
text_body = "redcap_url=https%3A%2F%2Fredcap.partners.org%2Fredcap%2F&project_url=https%3A%2F%2Fredcap.partners.org%2Fredcap%2Fredcap_v10.0.30%2Findex.php%3Fpid%3D26709&project_id=26709&username=kc244&record=subject_1&instrument=inclusionexclusion_checklist&inclusionexclusion_checklist_complete=0"
save_post_from_redcap(text_body,
Lochness['redcap']['data_entry_trigger_csv'])
# second sync without update in the db
sync(Lochness, subject, False)
assert raw_json.is_file()
rmtree('tmp_lochness')
def test_initialize_metadata_then_sync(args_and_Lochness):
args, Lochness = args_and_Lochness
# before initializing metadata
for study in args.studies:
phoenix_path = Path(Lochness['phoenix_root'])
general_path = phoenix_path / 'GENERAL'
metadata = general_path / study / f"{study}_metadata.csv"
initialize_metadata(Lochness, study, 'record_id1', 'cons_date')
for subject in lochness.read_phoenix_metadata(Lochness,
studies=['StudyA']):
sync(Lochness, subject, False)
show_tree_then_delete('tmp_lochness')
def test_sync_det_update_while_diff_file_leads_to_data_overwrite(
lochness_subject_raw_json):
Lochness, subject, raw_json = lochness_subject_raw_json
sync(Lochness, subject, False)
# change the content of the existing json
with open(raw_json, 'w') as json_file:
json.dump({'test': 'test'}, json_file)
text_body = "redcap_url=https%3A%2F%2Fredcap.partners.org%2Fredcap%2F&project_url=https%3A%2F%2Fredcap.partners.org%2Fredcap%2Fredcap_v10.0.30%2Findex.php%3Fpid%3D26709&project_id=26709&username=kc244&record=subject_1&instrument=inclusionexclusion_checklist&inclusionexclusion_checklist_complete=0"
save_post_from_redcap(text_body,
Lochness['redcap']['data_entry_trigger_csv'])
# second sync without update in the db
sync(Lochness, subject, False)
with open(raw_json, 'r') as json_file:
new_content_dict = json.load(json_file)
assert {'test': 'test'} != new_content_dict
rmtree('tmp_lochness')
def test_sync_det_update_while_file_leads_to_mtime_update(
lochness_subject_raw_json):
Lochness, subject, raw_json = lochness_subject_raw_json
sync(Lochness, subject, False)
init_mtime = raw_json.stat().st_mtime
text_body = "redcap_url=https%3A%2F%2Fredcap.partners.org%2Fredcap%2F&project_url=https%3A%2F%2Fredcap.partners.org%2Fredcap%2Fredcap_v10.0.30%2Findex.php%3Fpid%3D26709&project_id=26709&username=kc244&record=subject_1&instrument=inclusionexclusion_checklist&inclusionexclusion_checklist_complete=0"
save_post_from_redcap(text_body,
Lochness['redcap']['data_entry_trigger_csv'])
with open(raw_json, 'r') as json_file:
init_content_dict = json.load(json_file)
# second sync without update in the db
sync(Lochness, subject, False)
with open(raw_json, 'r') as json_file:
new_content_dict = json.load(json_file)
assert init_content_dict == new_content_dict
assert init_mtime < raw_json.stat().st_mtime
rmtree('tmp_lochness')
def test_sync_twice(lochness_subject_raw_json):
Lochness, subject, raw_json = lochness_subject_raw_json
sync(Lochness, subject, False)
# second sync without update in the db
sync(Lochness, subject, False)
rmtree('tmp_lochness')
def test_sync_init(lochness_subject_raw_json):
Lochness, subject, raw_json = lochness_subject_raw_json
sync(Lochness, subject, False)
assert raw_json.is_file() == True
rmtree('tmp_lochness')