def upper_bound(G, k, H):
'''
the upper bound of size of k-plex of H in G
'''
# upper_bound_by_deg = min([nx.degree(G, node) for node in H]) + k
# upper_bound_by_deg = 100
subg = nx.subgraph(G, H)
validate_neighbors = {node for node in neighbors(G, H) if len(set(G.neighbors(node)).intersection(H)) >= len(H)+1-k}
strict_nodes = [node for node in H if len(subg[node]) == len(H)-k]
if len(strict_nodes) > 0:
avaliable_nodes = {node for node in G.neighbors(strict_nodes[0]) if node not in H}
for i in range(1, len(strict_nodes)):
avaliable_nodes.intersection_update({node for node in G.neighbors(strict_nodes[i]) if node not in H})
avaliable_nodes.intersection_update(validate_neighbors)
return len(H)+len(avaliable_nodes)
else:
min_d = float('inf')
for node in H:
nbrs = neighbors(G, [node])
nbrs.intersection_update(validate_neighbors)
num_non_nbrs = k-1-(subg.number_of_nodes() - nx.degree(subg, node))
min_d = min(min_d, len(nbrs)+num_non_nbrs)
return min_d
def cand_gen(G, k, a, c, cores=None):
'''
generate all the branch given a k-plex a
a: current k-plex
c: the block
'''
b = neighbors(G, a)
b.difference_update(c)
# the strict nodes
subg = G.subgraph(a)
strict_nodes = {node for node in a if nx.degree(subg, node) == len(a)-k }
for node in strict_nodes:
b.intersection_update(G.neighbors(node))
# always reshape by optimal
if cores is None:
b = {node for node in list(b) if nx.degree(G, node) >= len(optimal)-k}
else:
b = {node for node in list(b) if cores[node]>=len(optimal)-k}
# calculate the valid candidates
b = {node for node in b if len(set(G.neighbors(node)).intersection(a)) >= len(a)+1-k }
# sort the candidate list
b = list(b)
# b.sort(key = lambda x: len(set(G.neighbors(x)).intersection(a)), reverse=True)
return b
