def testSlicing(self):
"""Test slicing."""
# Test get error if try to slice before setup.
self.assertRaises(NotImplementedError, self.testslicer._sliceSimData, 0)
nbins = 10
binsize = (self.dvmax - self.dvmin) / (float(nbins))
self.testslicer = NDSlicer(self.dvlist, binsList=nbins)
for nvalues in (1000, 10000):
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.testslicer.setupSlicer(dv)
sum = 0
for i, s in enumerate(self.testslicer):
idxs = s['idxs']
dataslice = dv[idxs]
sum += len(idxs)
if len(dataslice) > 0:
for i, dvname, b in zip(list(range(self.nd)), self.dvlist, s['slicePoint']['binLeft']):
self.assertGreaterEqual((dataslice[dvname].min() - b), 0)
if i < self.testslicer.nslice-1:
self.assertLessEqual((dataslice[dvname].max() - b), binsize)
else:
self.assertAlmostEqual((dataslice[dvname].max() - b), binsize)
self.assertTrue(len(dataslice), nvalues/float(nbins))
# and check that every data value was assigned somewhere.
self.assertEqual(sum, nvalues)
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues,
self.dvmin,
self.dvmax,
self.nd,
random=True)
self.dvlist = self.dv.dtype.names
nvalues = 1000
bins = np.arange(self.dvmin, self.dvmax, 0.1)
binsList = []
self.iterlist = []
for i in range(self.nd):
binsList.append(bins)
# (remember iteration doesn't use the very last bin in 'bins')
self.iterlist.append(bins[:-1])
dv = makeDataValues(nvalues,
self.dvmin,
self.dvmax,
self.nd,
random=True)
self.testslicer = NDSlicer(self.dvlist, binsList=binsList)
self.testslicer.setupSlicer(dv)
class TestNDSlicerIteration(unittest.TestCase):
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.dvlist = self.dv.dtype.names
nvalues = 1000
bins = np.arange(self.dvmin, self.dvmax, 0.1)
binsList = []
self.iterlist = []
for i in range(self.nd):
binsList.append(bins)
# (remember iteration doesn't use the very last bin in 'bins')
self.iterlist.append(bins[:-1])
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.testslicer = NDSlicer(self.dvlist, binsList=binsList)
self.testslicer.setupSlicer(dv)
def tearDown(self):
del self.testslicer
self.testslicer = None
def testIteration(self):
"""Test iteration."""
for s, ib in zip(self.testslicer, itertools.product(*self.iterlist)):
self.assertEqual(s['slicePoint']['binLeft'], ib)
def testGetItem(self):
"""Test getting indexed binpoint."""
for i, s in enumerate(self.testslicer):
self.assertEqual(self.testslicer[i]['slicePoint']['binLeft'], s['slicePoint']['binLeft'])
self.assertEqual(self.testslicer[0]['slicePoint']['binLeft'], (0.0, 0.0, 0.0))
class TestNDSlicerIteration(unittest.TestCase):
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.dvlist = self.dv.dtype.names
nvalues = 1000
bins = np.arange(self.dvmin, self.dvmax, 0.1)
binsList = []
self.iterlist = []
for i in range(self.nd):
binsList.append(bins)
# (remember iteration doesn't use the very last bin in 'bins')
self.iterlist.append(bins[:-1])
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.testslicer = NDSlicer(self.dvlist, binsList=binsList)
self.testslicer.setupSlicer(dv)
def tearDown(self):
del self.testslicer
self.testslicer = None
def testIteration(self):
"""Test iteration."""
for s, ib in zip(self.testslicer, itertools.product(*self.iterlist)):
self.assertEqual(s['slicePoint']['binLeft'], ib)
def testGetItem(self):
"""Test getting indexed binpoint."""
for i, s in enumerate(self.testslicer):
self.assertEqual(self.testslicer[i]['slicePoint']['binLeft'], s['slicePoint']['binLeft'])
self.assertEqual(self.testslicer[0]['slicePoint']['binLeft'], (0.0, 0.0, 0.0))
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.dvlist = self.dv.dtype.names
self.testslicer = NDSlicer(self.dvlist)
class TestNDSlicerEqual(unittest.TestCase):
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues,
self.dvmin,
self.dvmax,
self.nd,
random=20367)
self.dvlist = self.dv.dtype.names
self.testslicer = NDSlicer(self.dvlist, binsList=100)
self.testslicer.setupSlicer(self.dv)
def tearDown(self):
del self.testslicer
self.testslicer = None
def testEquivalence(self):
"""Test equals method."""
# Note that two ND slicers will be considered equal if they are both the same kind of
# slicer AND have the same bins in all dimensions.
# Set up another slicer to match (same bins, although not the same data).
dv2 = makeDataValues(100,
self.dvmin,
self.dvmax,
self.nd,
random=10029)
dvlist = dv2.dtype.names
testslicer2 = NDSlicer(sliceColList=dvlist,
binsList=self.testslicer.bins)
testslicer2.setupSlicer(dv2)
self.assertEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different bins)
dv2 = makeDataValues(1000,
self.dvmin + 1,
self.dvmax + 1,
self.nd,
random=209837)
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different dimensions)
dv2 = makeDataValues(1000,
self.dvmin,
self.dvmax,
self.nd - 1,
random=50623)
testslicer2 = NDSlicer(dv2.dtype.names, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up a different kind of slicer that should not match.
testslicer2 = UniSlicer()
dv2 = makeDataValues(100, 0, 1, random=22310098)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
def testSetupSlicerNbinsZeros(self):
"""Test handling case of data being single values."""
dv = makeDataValues(100, 0, 0, self.nd, random=-1)
nbins = 10
testslicer = NDSlicer(self.dvlist, binsList=nbins)
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter("always")
testslicer.setupSlicer(dv)
self.assertIn('creasing binMax', str(w[-1].message))
expectednbins = nbins**self.nd
self.assertEqual(testslicer.nslice, expectednbins)
def testSetupSlicerNbinsZeros(self):
"""Test handling case of data being single values."""
dv = makeDataValues(100, 0, 0, self.nd, random=-1)
nbins = 10
testslicer = NDSlicer(self.dvlist, binsList=nbins)
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter("always")
testslicer.setupSlicer(dv)
self.assertIn('creasing binMax', str(w[-1].message))
expectednbins = nbins ** self.nd
self.assertEqual(testslicer.nslice, expectednbins)
def testSetupSlicerBins(self):
"""Test setting up slicer using defined bins."""
# Used right bins?
bins = np.arange(self.dvmin, self.dvmax, 0.1)
binlist = []
for d in range(self.nd):
binlist.append(bins)
testslicer = NDSlicer(self.dvlist, binsList=binlist)
testslicer.setupSlicer(self.dv)
for d in range(self.nd):
np.testing.assert_equal(testslicer.bins[d], bins)
self.assertEqual(testslicer.nslice, (len(bins)-1)**self.nd)
def testSetupSlicerBins(self):
"""Test setting up slicer using defined bins."""
# Used right bins?
bins = np.arange(self.dvmin, self.dvmax, 0.1)
binlist = []
for d in range(self.nd):
binlist.append(bins)
testslicer = NDSlicer(self.dvlist, binsList=binlist)
testslicer.setupSlicer(self.dv)
for d in range(self.nd):
np.testing.assert_equal(testslicer.bins[d], bins)
self.assertEqual(testslicer.nslice, (len(bins)-1)**self.nd)
def testSetupSlicerEquivalent(self):
"""Test setting up slicer using defined bins and nbins is equal where expected."""
for nbins in (20, 105):
testslicer = NDSlicer(self.dvlist, binsList=nbins)
bins = makeDataValues(nbins+1, self.dvmin, self.dvmax, self.nd, random=-1)
binsList = []
for i in bins.dtype.names:
binsList.append(bins[i])
for nvalues in (100, 10000):
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=64432)
testslicer.setupSlicer(dv)
for i in range(self.nd):
np.testing.assert_allclose(testslicer.bins[i], binsList[i])
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues,
self.dvmin,
self.dvmax,
self.nd,
random=20367)
self.dvlist = self.dv.dtype.names
self.testslicer = NDSlicer(self.dvlist, binsList=100)
self.testslicer.setupSlicer(self.dv)
def testSetupSlicerEquivalent(self):
"""Test setting up slicer using defined bins and nbins is equal where expected."""
for nbins in (20, 105):
testslicer = NDSlicer(self.dvlist, binsList=nbins)
bins = makeDataValues(nbins+1, self.dvmin, self.dvmax, self.nd, random=False)
binsList = []
for i in bins.dtype.names:
binsList.append(bins[i])
for nvalues in (100, 10000):
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
testslicer.setupSlicer(dv)
for i in range(self.nd):
np.testing.assert_allclose(testslicer.bins[i], binsList[i])
def testSetupSlicerNbins(self):
"""Test setting up slicer using nbins."""
for nvalues in (100, 1000):
for nbins in (5, 25, 74):
dv = makeDataValues(nvalues,
self.dvmin,
self.dvmax,
self.nd,
random=False)
# Right number of bins?
# expect one more 'bin' to accomodate last right edge, but nbins accounts for this
testslicer = NDSlicer(self.dvlist, binsList=nbins)
testslicer.setupSlicer(dv)
self.assertEqual(testslicer.nslice, nbins**self.nd)
# Bins of the right size?
for i in range(self.nd):
bindiff = np.diff(testslicer.bins[i])
expectedbindiff = (self.dvmax - self.dvmin) / float(nbins)
np.testing.assert_allclose(bindiff, expectedbindiff)
# Can we use a list of nbins too and get the right number of bins?
nbinsList = []
expectednbins = 1
for d in range(self.nd):
nbinsList.append(nbins + d)
expectednbins *= (nbins + d)
testslicer = NDSlicer(self.dvlist, binsList=nbinsList)
testslicer.setupSlicer(dv)
self.assertEqual(testslicer.nslice, expectednbins)
def testSlicing(self):
"""Test slicing."""
# Test get error if try to slice before setup.
self.assertRaises(NotImplementedError, self.testslicer._sliceSimData, 0)
nbins = 10
binsize = (self.dvmax - self.dvmin) / (float(nbins))
self.testslicer = NDSlicer(self.dvlist, binsList=nbins)
for nvalues in (1000, 10000):
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.testslicer.setupSlicer(dv)
sum = 0
for i, s in enumerate(self.testslicer):
idxs = s['idxs']
dataslice = dv[idxs]
sum += len(idxs)
if len(dataslice)>0:
for i, dvname, b in zip(range(self.nd), self.dvlist, s['slicePoint']['binLeft']):
self.assertGreaterEqual((dataslice[dvname].min() - b), 0)
if i < self.testslicer.nslice-1:
self.assertLessEqual((dataslice[dvname].max() - b), binsize)
else:
self.assertAlmostEqual((dataslice[dvname].max() - b), binsize)
self.assertTrue(len(dataslice), nvalues/float(nbins))
# and check that every data value was assigned somewhere.
self.assertEqual(sum, nvalues)
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.dvlist = self.dv.dtype.names
self.testslicer = NDSlicer(self.dvlist)
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=20367)
self.dvlist = self.dv.dtype.names
self.testslicer = NDSlicer(self.dvlist, binsList=100)
self.testslicer.setupSlicer(self.dv)
class TestNDSlicerEqual(unittest.TestCase):
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=20367)
self.dvlist = self.dv.dtype.names
self.testslicer = NDSlicer(self.dvlist, binsList=100)
self.testslicer.setupSlicer(self.dv)
def tearDown(self):
del self.testslicer
self.testslicer = None
def testEquivalence(self):
"""Test equals method."""
# Note that two ND slicers will be considered equal if they are both the same kind of
# slicer AND have the same bins in all dimensions.
# Set up another slicer to match (same bins, although not the same data).
dv2 = makeDataValues(100, self.dvmin, self.dvmax, self.nd, random=10029)
dvlist = dv2.dtype.names
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=self.testslicer.bins)
testslicer2.setupSlicer(dv2)
self.assertEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different bins)
dv2 = makeDataValues(1000, self.dvmin+1, self.dvmax+1, self.nd, random=209837)
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different dimensions)
dv2 = makeDataValues(1000, self.dvmin, self.dvmax, self.nd-1, random=50623)
testslicer2 = NDSlicer(dv2.dtype.names, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up a different kind of slicer that should not match.
testslicer2 = UniSlicer()
dv2 = makeDataValues(100, 0, 1, random=22310098)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
def setUp(self):
self.dvmin = 0
self.dvmax = 1
nvalues = 1000
self.nd = 3
self.dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.dvlist = self.dv.dtype.names
nvalues = 1000
bins = np.arange(self.dvmin, self.dvmax, 0.1)
binsList = []
self.iterlist = []
for i in range(self.nd):
binsList.append(bins)
# (remember iteration doesn't use the very last bin in 'bins')
self.iterlist.append(bins[:-1])
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=True)
self.testslicer = NDSlicer(self.dvlist, binsList=binsList)
self.testslicer.setupSlicer(dv)
def testSetupSlicerNbins(self):
"""Test setting up slicer using nbins."""
for nvalues in (100, 1000):
for nbins in (5, 25, 74):
dv = makeDataValues(nvalues, self.dvmin, self.dvmax, self.nd, random=False)
# Right number of bins?
# expect one more 'bin' to accomodate last right edge, but nbins accounts for this
testslicer = NDSlicer(self.dvlist, binsList=nbins)
testslicer.setupSlicer(dv)
self.assertEqual(testslicer.nslice, nbins**self.nd)
# Bins of the right size?
for i in range(self.nd):
bindiff = np.diff(testslicer.bins[i])
expectedbindiff = (self.dvmax - self.dvmin) / float(nbins)
np.testing.assert_allclose(bindiff, expectedbindiff)
# Can we use a list of nbins too and get the right number of bins?
nbinsList = []
expectednbins = 1
for d in range(self.nd):
nbinsList.append(nbins + d)
expectednbins *= (nbins + d)
testslicer = NDSlicer(self.dvlist, binsList=nbinsList)
testslicer.setupSlicer(dv)
self.assertEqual(testslicer.nslice, expectednbins)
def testEquivalence(self):
"""Test equals method."""
# Note that two ND slicers will be considered equal if they are both the same kind of
# slicer AND have the same bins in all dimensions.
# Set up another slicer to match (same bins, although not the same data).
dv2 = makeDataValues(100, self.dvmin, self.dvmax, self.nd, random=True)
dvlist = dv2.dtype.names
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=self.testslicer.bins)
testslicer2.setupSlicer(dv2)
self.assertEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different bins)
dv2 = makeDataValues(1000, self.dvmin+1, self.dvmax+1, self.nd, random=True)
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different dimensions)
dv2 = makeDataValues(1000, self.dvmin, self.dvmax, self.nd-1, random=True)
testslicer2 = NDSlicer(dv2.dtype.names, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up a different kind of slicer that should not match.
testslicer2 = UniSlicer()
dv2 = makeDataValues(100, 0, 1, random=True)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
def testSlicertype(self):
"""Test instantiation of slicer sets slicer type as expected."""
testslicer = NDSlicer(self.dvlist)
self.assertEqual(testslicer.slicerName, testslicer.__class__.__name__)
self.assertEqual(testslicer.slicerName, 'NDSlicer')
def testEquivalence(self):
"""Test equals method."""
# Note that two ND slicers will be considered equal if they are both the same kind of
# slicer AND have the same bins in all dimensions.
# Set up another slicer to match (same bins, although not the same data).
dv2 = makeDataValues(100, self.dvmin, self.dvmax, self.nd, random=True)
dvlist = dv2.dtype.names
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=self.testslicer.bins)
testslicer2.setupSlicer(dv2)
self.assertEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different bins)
dv2 = makeDataValues(1000, self.dvmin+1, self.dvmax+1, self.nd, random=True)
testslicer2 = NDSlicer(sliceColList=dvlist, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up another slicer that should not match (different dimensions)
dv2 = makeDataValues(1000, self.dvmin, self.dvmax, self.nd-1, random=True)
testslicer2 = NDSlicer(dv2.dtype.names, binsList=100)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
# Set up a different kind of slicer that should not match.
testslicer2 = UniSlicer()
dv2 = makeDataValues(100, 0, 1, random=True)
testslicer2.setupSlicer(dv2)
self.assertNotEqual(self.testslicer, testslicer2)
