def setup_app(command, conf, vars):
"""Place any commands to setup majic_web_service here
:param conf: configuration for the setup
:param vars: variables
:param command: commands
"""
# Don't reload the app if it was loaded under the testing environment
load_environment(conf.global_conf, conf.local_conf)
filename = os.path.split(conf.filename)[-1]
if filename == 'test.ini':
log.debug("Creating database")
# Recreate the tables
Base.metadata.drop_all(bind=Session.bind)
Base.metadata.create_all(bind=Session.bind)
with session_scope(Session) as session:
stat_created = ModelRunStatus(constants.MODEL_RUN_STATUS_CREATED)
stat_submitted = ModelRunStatus(constants.MODEL_RUN_STATUS_SUBMITTED)
stat_pending = ModelRunStatus(constants.MODEL_RUN_STATUS_PENDING)
stat_running = ModelRunStatus(constants.MODEL_RUN_STATUS_RUNNING)
stat_completed = ModelRunStatus(constants.MODEL_RUN_STATUS_COMPLETED)
stat_published = ModelRunStatus(constants.MODEL_RUN_STATUS_PUBLISHED)
stat_public = ModelRunStatus(constants.MODEL_RUN_STATUS_PUBLIC)
stat_failed = ModelRunStatus(constants.MODEL_RUN_STATUS_FAILED)
stat_submit_failed = ModelRunStatus(constants.MODEL_RUN_STATUS_SUBMIT_FAILED)
stat_unknown = ModelRunStatus(constants.MODEL_RUN_STATUS_UNKNOWN)
map(session.add, [stat_created, stat_submitted, stat_pending, stat_running, stat_completed, stat_published,
stat_public, stat_failed, stat_submit_failed, stat_unknown])
def clean_database(self):
"""
Cleans the dynamic data from the database
"""
with session_scope() as session:
# delete all runs except the scientific configurations
session \
.query(ModelRun) \
.delete()
session \
.query(User) \
.delete()
def add_model_run(
self,
workbench_username,
last_status_change,
status, model_name="model name",
description="a description",
majic_username=None):
"""
Add a model run to the db
:param workbench_username: username for the workbench
:param last_status_change: last staus change
:param status: current status (as string)
:param model_name: name of the model
:param description: description of the model
:param majic_username: username in majic, defaults to the workbench_username if not set
:return:id of model run created
"""
with session_scope() as session:
try:
if majic_username is not None:
user = session.query(User).filter(User.username == majic_username).one()
else:
user = session.query(User).filter(User.username == workbench_username).one()
except NoResultFound:
user = User(workbench_username=workbench_username)
if majic_username is None:
user.username = workbench_username
else:
user.username = majic_username
session.add(user)
if status is not None:
found_status = session.query(ModelRunStatus).filter(ModelRunStatus.name == status).one()
else:
found_status = None
model_run = ModelRun()
model_run.name = model_name
model_run.status = found_status
model_run.last_status_change = last_status_change
model_run.description = description
model_run.user = user
session.add(model_run)
session.flush()
return model_run.id