def _save(self, runnumber, basename, outputWksp):
if not self.getProperty("SaveData").value:
return
# determine where to save the data
saveDir = self.getPropertyValue("OutputDirectory").strip()
if len(saveDir) <= 0:
self.log().notice('Using default save location')
saveDir = os.path.join(self.get_IPTS_Local(runnumber), 'shared', 'data')
self.log().notice('Writing to \'' + saveDir + '\'')
SaveNexusProcessed(InputWorkspace=outputWksp,
Filename=os.path.join(saveDir, 'nexus', basename + '.nxs'))
SaveAscii(InputWorkspace=outputWksp,
Filename=os.path.join(saveDir, 'd_spacing', basename + '.dat'))
ConvertUnits(InputWorkspace=outputWksp, OutputWorkspace='WS_tof',
Target="TOF", AlignBins=False)
# GSAS and FullProf require data in time-of-flight
SaveGSS(InputWorkspace='WS_tof',
Filename=os.path.join(saveDir, 'gsas', basename + '.gsa'),
Format='SLOG', SplitFiles=False, Append=False, ExtendedHeader=True)
SaveFocusedXYE(InputWorkspace='WS_tof',
Filename=os.path.join(
saveDir, 'fullprof', basename + '.dat'),
SplitFiles=True, Append=False)
DeleteWorkspace(Workspace='WS_tof')
def _save(self, saveDir, basename, outputWksp):
if not self.getProperty("SaveData").value:
return
self.log().notice('Writing to \'' + saveDir + '\'')
SaveNexusProcessed(InputWorkspace=outputWksp,
Filename=os.path.join(saveDir, 'nexus',
basename + '.nxs'))
SaveAscii(InputWorkspace=outputWksp,
Filename=os.path.join(saveDir, 'd_spacing',
basename + '.dat'))
ConvertUnits(InputWorkspace=outputWksp,
OutputWorkspace='WS_tof',
Target="TOF",
AlignBins=False)
# GSAS and FullProf require data in time-of-flight
SaveGSS(InputWorkspace='WS_tof',
Filename=os.path.join(saveDir, 'gsas', basename + '.gsa'),
Format='SLOG',
SplitFiles=False,
Append=False,
ExtendedHeader=True)
SaveFocusedXYE(InputWorkspace='WS_tof',
Filename=os.path.join(saveDir, 'fullprof',
basename + '.dat'),
SplitFiles=True,
Append=False)
DeleteWorkspace(Workspace='WS_tof')
def _save(self, runnumber, basename, norm):
if not self.getProperty("SaveData").value:
return
saveDir = self.getProperty("OutputDirectory").value.strip()
if len(saveDir) <= 0:
self.log().notice('Using default save location')
saveDir = os.path.join(
self.get_IPTS_Local(runnumber), 'shared', 'data')
self.log().notice('Writing to \'' + saveDir + '\'')
if norm == 'None':
SaveNexusProcessed(InputWorkspace='WS_red',
Filename=os.path.join(saveDir, 'nexus', basename + '.nxs'))
SaveAscii(InputWorkspace='WS_red',
Filename=os.path.join(saveDir, 'd_spacing', basename + '.dat'))
ConvertUnits(InputWorkspace='WS_red', OutputWorkspace='WS_tof',
Target="TOF", AlignBins=False)
else:
SaveNexusProcessed(InputWorkspace='WS_nor',
Filename=os.path.join(saveDir, 'nexus', basename + '.nxs'))
SaveAscii(InputWorkspace='WS_nor',
Filename=os.path.join(saveDir, 'd_spacing', basename + '.dat'))
ConvertUnits(InputWorkspace='WS_nor', OutputWorkspace='WS_tof',
Target="TOF", AlignBins=False)
SaveGSS(InputWorkspace='WS_tof',
Filename=os.path.join(saveDir, 'gsas', basename + '.gsa'),
Format='SLOG', SplitFiles=False, Append=False, ExtendedHeader=True)
SaveFocusedXYE(InputWorkspace='WS_tof',
Filename=os.path.join(
saveDir, 'fullprof', basename + '.dat'),
SplitFiles=True, Append=False)
DeleteWorkspace(Workspace='WS_tof')
def _save_focused_output_files_as_xye(self, instrument, sample_path, bank,
sample_workspace, rb_num):
xye_output_path = path.join(
path_handling.get_output_path(), "Focus",
self._generate_output_file_name(instrument, sample_path, bank,
".dat"))
SaveFocusedXYE(InputWorkspace=sample_workspace,
Filename=xye_output_path,
SplitFiles=False)
if rb_num:
xye_output_path = path.join(
path_handling.get_output_path(), "User", rb_num, "Focus",
self._generate_output_file_name(instrument, sample_path, bank,
".dat"))
SaveFocusedXYE(InputWorkspace=sample_workspace,
Filename=xye_output_path,
SplitFiles=False)
def _save_focused_output_files_as_topas_xye(self, instrument, sample_run,
van_run, bank,
sample_workspace, rb_num,
unit):
xye_output_path = path.join(
output_settings.get_output_path(), "Focus",
self._generate_output_file_name(instrument, sample_run, van_run,
bank, unit, ".abc"))
SaveFocusedXYE(InputWorkspace=sample_workspace,
Filename=xye_output_path,
SplitFiles=False,
Format="TOPAS")
if rb_num:
xye_output_path = path.join(
output_settings.get_output_path(), "User", rb_num, "Focus",
self._generate_output_file_name(instrument, sample_run,
van_run, bank, unit, ".abc"))
SaveFocusedXYE(InputWorkspace=sample_workspace,
Filename=xye_output_path,
SplitFiles=False,
Format="TOPAS")
#!/usr/bin/env python2
import os
import sys
sys.path.insert(0, "/opt/mantidnightly/bin")
from mantid.simpleapi import HB2AReduce, SaveFocusedXYE
filename = sys.argv[1]
output_file = os.path.split(filename)[-1].replace('.dat', '.xye')
outdir = sys.argv[2]
ws = HB2AReduce(filename)
SaveFocusedXYE(ws,
Filename=os.path.join(outdir, output_file),
SplitFiles=False,
IncludeHeader=False)
d = (counts / monitor).ravel()
e = (np.sqrt(counts) / monitor).ravel()
data = CreateWorkspace(DataX=xarray.ravel()[index_array],
DataY=d[index_array],
DataE=np.sqrt(d[index_array]))
n = np.repeat(vcorr, len(xarray.T)).ravel() / normalization_monitor
norm = CreateWorkspace(DataX=xarray.ravel()[index_array],
DataY=n[index_array],
DataE=np.sqrt(n[index_array]))
data = Rebin(data, Params=binning)
norm = Rebin(norm, Params=binning)
ws = Divide(data, norm)
SaveFocusedXYE(ws, Filename='out.xye', SplitFiles=False, IncludeHeader=False)
c = CreateWorkspace(DataX=xarray.ravel()[index_array],
DataY=counts.ravel()[index_array],
DataE=np.sqrt(counts.ravel()[index_array]))
n = CreateWorkspace(DataX=xarray.ravel()[index_array],
DataY=n[index_array],
DataE=np.sqrt(n[index_array]))
#data = Rebin(data, Params=binning)
#norm = Rebin(norm, Params=binning)
d = Divide(c, n)
return ws
if powder:
from mantid.simpleapi import LoadWAND, WANDPowderReduction, SavePlot1D, SaveFocusedXYE, Scale
data = LoadWAND(filename, Grouping='4x4')
runNumber = data.getRunNumber()
cal = get_vanadium(runNumber)
WANDPowderReduction(InputWorkspace=data,
CalibrationWorkspace=cal,
Target='Theta',
NumberBins=1200,
OutputWorkspace='reduced')
Scale(InputWorkspace='reduced',OutputWorkspace='reduced',Factor=100)
SaveFocusedXYE('reduced', Filename=os.path.join(outdir, output_file+'.xye'), SplitFiles=False, IncludeHeader=False)
div = SavePlot1D('reduced', OutputType='plotly')
request = publish_plot('HB2C', runNumber, files={'file': div})
else: # Single Crystal
with h5py.File(filename, 'r') as f:
offset = decode(f['/entry/DASlogs/HB2C:Mot:s2.RBV/average_value'].value[0])
title = decode(f['/entry/title'].value[0])
mon = decode(f['/entry/monitor1/total_counts'].value[0])
duration = decode(f['/entry/duration'].value[0])
run_number = decode(f['/entry/run_number'].value[0])
bc = np.zeros((512*480*8))
for b in range(8):
bc += np.bincount(f['/entry/bank'+str(b+1)+'_events/event_id'].value,
minlength=512*480*8)