def do_load_stack(self, parameters: LoadingParameters, progress):
ds = Dataset(
loader.load_p(parameters.sample, parameters.dtype, progress))
ds.sample._is_sinograms = parameters.sinograms
ds.sample.pixel_size = parameters.pixel_size
if parameters.sample.log_file:
ds.sample.log_file = loader.load_log(parameters.sample.log_file)
if parameters.flat_before:
ds.flat_before = loader.load_p(parameters.flat_before,
parameters.dtype, progress)
if parameters.flat_before.log_file:
ds.flat_before.log_file = loader.load_log(
parameters.flat_before.log_file)
if parameters.flat_after:
ds.flat_after = loader.load_p(parameters.flat_after,
parameters.dtype, progress)
if parameters.flat_after.log_file:
ds.flat_after.log_file = loader.load_log(
parameters.flat_after.log_file)
if parameters.dark_before:
ds.dark_before = loader.load_p(parameters.dark_before,
parameters.dtype, progress)
if parameters.dark_after:
ds.dark_after = loader.load_p(parameters.dark_after,
parameters.dtype, progress)
if parameters.proj_180deg:
ds.sample.proj180deg = loader.load_p(parameters.proj_180deg,
parameters.dtype, progress)
return ds
def add_log_to_sample(self, images_id: uuid.UUID, log_file: str):
images = self.get_images_by_uuid(images_id)
if images is None:
raise RuntimeError
log = loader.load_log(log_file)
log.raise_if_angle_missing(images.filenames)
images.log_file = log
def ensure_sample_log_consistency(self, field: Field, file_name, image_filenames):
if file_name is None or file_name == "":
return
log = load_log(file_name)
log.raise_if_angle_missing(image_filenames)
self._update_field_action(field, file_name)
def add_log_to_sample(self, stack_name: str, log_file: str):
stack_dock = self.get_stack_by_name(stack_name)
if stack_dock is None:
raise RuntimeError(f"Failed to get stack with name {stack_name}")
stack: StackVisualiserView = stack_dock.widget() # type: ignore
log = loader.load_log(log_file)
log.raise_if_angle_missing(stack.presenter.images.filenames)
stack.presenter.images.log_file = log
def do_load_dataset(self, parameters: LoadingParameters,
progress) -> Dataset:
sample = loader.load_p(parameters.sample, parameters.dtype, progress)
ds = Dataset(sample)
sample._is_sinograms = parameters.sinograms
sample.pixel_size = parameters.pixel_size
if parameters.sample.log_file:
ds.sample.log_file = loader.load_log(parameters.sample.log_file)
if parameters.flat_before:
flat_before = loader.load_p(parameters.flat_before,
parameters.dtype, progress)
ds.flat_before = flat_before
if parameters.flat_before.log_file:
flat_before.log_file = loader.load_log(
parameters.flat_before.log_file)
if parameters.flat_after:
flat_after = loader.load_p(parameters.flat_after, parameters.dtype,
progress)
ds.flat_after = flat_after
if parameters.flat_after.log_file:
flat_after.log_file = loader.load_log(
parameters.flat_after.log_file)
if parameters.dark_before:
dark_before = loader.load_p(parameters.dark_before,
parameters.dtype, progress)
ds.dark_before = dark_before
if parameters.dark_after:
dark_after = loader.load_p(parameters.dark_after, parameters.dtype,
progress)
ds.dark_after = dark_after
if parameters.proj_180deg:
sample.proj180deg = loader.load_p(parameters.proj_180deg,
parameters.dtype, progress)
self.datasets[ds.id] = ds
return ds