def test_multiple_strings(self):
t1 = 'acgtacgactacgactacgactacgact'
t2 = 'tcgc'
t3 = 'acg'
t4 = 'actgg'
sys.argv = [sys.argv[0], t1, t2, t3, t4]
text, patterns = match_loc.parse()
self.assertEqual(text, t1)
self.assertEqual(patterns, [t2, t3, t4])
def test_single_files(self):
n1 = 'genome.fasta.txt'
n2 = 'ribosome.fasta.txt'
t1 = 'acgttcagctacgatcgactacgactagctacgactacgactacg'
t2 = 'gtcacta'
fasta.make_sample_fasta(n1, t1)
fasta.make_sample_fasta(n2, t2)
sys.argv = [sys.argv[0], n1, n2]
text, patterns = match_loc.parse()
self.assertEqual(text, t1)
self.assertEqual(patterns, [t2])
def test_misspelled_pattern(self):
sys.argv = ['botulism.fasta.txt', 'gttttggacc', 'gttcgs']
with self.assertRaises(ValueError):
match_loc.parse()
