def add_to_axes(self,
axes=None,
edgecolor='black',
fill=False,
plot_peaks=True):
"""Add 2 circles to the axes: one at the maximum and minimum radius of the ROI.
See Also
--------
CircleProfile.add_to_axes : Further parameter info.
"""
if axes is None:
fig, axes = plt.subplots()
axes.imshow(self.image_array)
axes.add_patch(
mpl_Circle((self.center.x, self.center.y),
edgecolor=edgecolor,
radius=self.radius * (1 + self.width_ratio),
fill=fill))
axes.add_patch(
mpl_Circle((self.center.x, self.center.y),
edgecolor=edgecolor,
radius=self.radius * (1 - self.width_ratio),
fill=fill))
if plot_peaks:
x_locs = [peak.x for peak in self.peaks]
y_locs = [peak.y for peak in self.peaks]
axes.autoscale(enable=False)
axes.scatter(x_locs, y_locs, s=20, marker='x', c=edgecolor)
def add_to_axes(self,
axes=None,
edgecolor='black',
fill=False,
plot_peaks=True):
"""Plot to an axes.
Parameters
----------
axes : matplotlib.Axes, None
The axes to plot on. If None, will create a new figure of the image array.
edgecolor : str
Color of the Circle; must be a valid matplotlib color.
fill : bool
Whether to fill the circle. matplotlib keyword.
plot_peaks : bool
If True, plots the found peaks as well.
"""
if axes is None:
fig, axes = plt.subplots()
axes.imshow(self.image_array)
axes.add_patch(
mpl_Circle((self.center.x, self.center.y),
edgecolor=edgecolor,
radius=self.radius,
fill=fill))
if plot_peaks:
x_locs = [peak.x for peak in self.peaks]
y_locs = [peak.y for peak in self.peaks]
axes.autoscale(enable=False)
axes.scatter(x_locs, y_locs, s=40, marker='x', c=edgecolor)
def to_mpl_patch(self):
"""
This function ...
:return:
"""
return mpl_Circle((self.center.x, self.center.y), self.radius, edgecolor='green', facecolor='none', lw=3, alpha=0.7)
def plot2axes(self, axes=None, edgecolor='black', fill=False, plot_peaks=True):
"""Add 2 circles to the axes: one at the maximum and minimum radius of the ROI.
See Also
--------
:meth:`~pylinac.core.profile.CircleProfile.plot2axes` : Further parameter info.
"""
if axes is None:
fig, axes = plt.subplots()
axes.imshow(self.image_array)
axes.add_patch(mpl_Circle((self.center.x, self.center.y), edgecolor=edgecolor, radius=self.radius*(1+self.width_ratio),
fill=fill))
axes.add_patch(mpl_Circle((self.center.x, self.center.y), edgecolor=edgecolor, radius=self.radius*(1-self.width_ratio),
fill=fill))
if plot_peaks:
x_locs = [peak.x for peak in self.peaks]
y_locs = [peak.y for peak in self.peaks]
axes.autoscale(enable=False)
axes.scatter(x_locs, y_locs, s=20, marker='x', c=edgecolor)
def to_mpl_patch(self):
"""
This function ...
:return:
"""
return mpl_Circle((self.center.x, self.center.y),
self.radius,
edgecolor='green',
facecolor='none',
lw=3,
alpha=0.7)
def add_to_axes(self, axes, edgecolor='black', fill=False):
"""Plot the Circle on the axes.
Parameters
----------
axes : matplotlib.axes.Axes
An MPL axes to plot to.
edgecolor : str
The color of the circle.
fill : bool
Whether to fill the circle with color or leave hollow.
"""
axes.add_patch(mpl_Circle((self.center.x, self.center.y), edgecolor=edgecolor, radius=self.radius, fill=fill))
def plot2axes(self, axes, edgecolor='black', fill=False):
"""Plot the Circle on the axes.
Parameters
----------
axes : matplotlib.axes.Axes
An MPL axes to plot to.
edgecolor : str
The color of the circle.
fill : bool
Whether to fill the circle with color or leave hollow.
"""
axes.add_patch(mpl_Circle((self.center.x, self.center.y), edgecolor=edgecolor, radius=self.radius, fill=fill))
def plot2axes(self, axes=None, edgecolor: str='black', fill: bool=False):
"""Plot the Circle on the axes.
Parameters
----------
axes : matplotlib.axes.Axes
An MPL axes to plot to.
edgecolor : str
The color of the circle.
fill : bool
Whether to fill the circle with color or leave hollow.
"""
if axes is None:
fig, axes = plt.subplots()
axes.imshow(self._array)
axes.add_patch(mpl_Circle((self.center.x, self.center.y), edgecolor=edgecolor, radius=self.radius, fill=fill))
def plot2axes(self, axes=None, edgecolor='black', fill=False, plot_peaks=True):
"""Plot the circle to an axes.
Parameters
----------
axes : matplotlib.Axes, None
The axes to plot on. If None, will create a new figure of the image array.
edgecolor : str
Color of the Circle; must be a valid matplotlib color.
fill : bool
Whether to fill the circle. matplotlib keyword.
plot_peaks : bool
If True, plots the found peaks as well.
"""
if axes is None:
fig, axes = plt.subplots()
axes.imshow(self.image_array)
axes.add_patch(
mpl_Circle((self.center.x, self.center.y), edgecolor=edgecolor, radius=self.radius, fill=fill))
if plot_peaks:
x_locs = [peak.x for peak in self.peaks]
y_locs = [peak.y for peak in self.peaks]
axes.autoscale(enable=False)
axes.scatter(x_locs, y_locs, s=40, marker='x', c=edgecolor)