def test_process_profiles(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, {}, [])
ctrl.process_profiles()
self.assertEqual(len(ctrl.unified_name_to_profiles), 3)
# check that all unified names are stored as keys
self.assertIn("hansmustermann", ctrl.unified_name_to_profiles)
self.assertIn("maxmustermann", ctrl.unified_name_to_profiles)
self.assertIn("heinrichmustermann", ctrl.unified_name_to_profiles)
# check that the profiles are stored correctly
self.assertEqual(ctrl.unified_name_to_profiles["hansmustermann"][0], self.profile1)
self.assertEqual(ctrl.unified_name_to_profiles["hansmustermann"][1], self.profile4)
self.assertEqual(ctrl.unified_name_to_profiles["maxmustermann"][0], self.profile2)
self.assertEqual(ctrl.unified_name_to_profiles["heinrichmustermann"][0], self.profile3)
# check that the document sets are created
self.assertIn("hansmustermann", ctrl.unified_name_to_authored_documents)
self.assertIn("hansmustermann", ctrl.unified_name_to_participated_documents)
self.assertIn("maxmustermann", ctrl.unified_name_to_authored_documents)
self.assertIn("maxmustermann", ctrl.unified_name_to_participated_documents)
self.assertIn("heinrichmustermann", ctrl.unified_name_to_authored_documents)
self.assertIn("heinrichmustermann", ctrl.unified_name_to_participated_documents)
def test_process_group_documents(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, {}, self.group_documents)
ctrl.process_profiles()
ctrl.process_group_documents()
self.assert_participations(ctrl)
def test_all_with_pipeline_data(self):
sqlite_in_memory = SQLiteConfiguration("")
data_controller = DataController(sqlite_in_memory)
data_controller.run_schema()
crawler = FileCrawler()
crawl_controller = CrawlController(
crawler, "d0b7f41f-ad37-3b47-ab70-9feac35557cc")
analysis_controller = AnalysisController()
pipeline_controller = PipelineController(
data_controller=data_controller,
crawl_controller=crawl_controller,
analysis_controller=analysis_controller)
# Clean run
pipeline_controller.execute()
# Test slim profiles
slim_profiles = data_controller.api_data.get_profiles_slim()
self.assertEqual(len(slim_profiles), 19)
# Test fields
fields = data_controller.api_data.get_fields()
self.assertEqual(len(fields), 14)
def test_process_group_documents(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, {}, self.group_documents)
ctrl.process_profiles()
ctrl.process_group_documents()
self.assert_participations(ctrl)
def __init__(self, *args, **kwargs):
super(MendeleyCache, self).__init__(*args, **kwargs)
# Read configuration
self.configuration = ServiceConfiguration()
self.configuration.load()
log.info("Configuration has been loaded")
# Create service controllers
self.data_controller = DataController(self.configuration.database)
self.data_controller.assert_schema()
log.info("Schema has been checked")
# Create crawler based on configuration
self.crawler = None
""":type : AbstractCrawler"""
if not self.configuration.uses_mendeley:
log.info("Pipeline uses FileCrawler")
self.crawler = FileCrawler()
else:
from mendeleycache.crawler.sdk_crawler import SDKCrawler
log.info("Pipeline uses SDKCrawler".format(
app_id=self.configuration.crawler.app_id,
app_secret=self.configuration.crawler.app_secret))
self.crawler = SDKCrawler(
app_id=self.configuration.crawler.app_id,
app_secret=self.configuration.crawler.app_secret)
# Create the pipeline
self.crawl_controller = CrawlController(
self.crawler, self.configuration.crawler.research_group)
self.analysis_controller = AnalysisController()
self.pipeline_controller = PipelineController(
data_controller=self.data_controller,
crawl_controller=self.crawl_controller,
analysis_controller=self.analysis_controller)
log.info("Pipeline has been initialized")
# Create the routing controllers
self.fields_controller = FieldsController(self, self.data_controller)
self.profiles_controller = ProfilesController(self,
self.data_controller,
self.configuration.cache)
self.publications_controller = DocumentsController(
self, self.data_controller)
self.cache_controller = CacheController(self, self.data_controller,
self.pipeline_controller,
self.configuration)
self.root_controller = RootController(self, self.data_controller,
self.configuration)
# Register the routes
self.register_routes()
log.info("Routes have been registered")
log.info("MendeleyCache has been initialized")
def test_process_profiles(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, {}, [])
ctrl.process_profiles()
self.assertEqual(len(ctrl.unified_name_to_profiles), 3)
# check that all unified names are stored as keys
self.assertIn("hansmustermann", ctrl.unified_name_to_profiles)
self.assertIn("maxmustermann", ctrl.unified_name_to_profiles)
self.assertIn("heinrichmustermann", ctrl.unified_name_to_profiles)
# check that the profiles are stored correctly
self.assertEqual(ctrl.unified_name_to_profiles["hansmustermann"][0],
self.profile1)
self.assertEqual(ctrl.unified_name_to_profiles["hansmustermann"][1],
self.profile4)
self.assertEqual(ctrl.unified_name_to_profiles["maxmustermann"][0],
self.profile2)
self.assertEqual(
ctrl.unified_name_to_profiles["heinrichmustermann"][0],
self.profile3)
# check that the document sets are created
self.assertIn("hansmustermann",
ctrl.unified_name_to_authored_documents)
self.assertIn("hansmustermann",
ctrl.unified_name_to_participated_documents)
self.assertIn("maxmustermann", ctrl.unified_name_to_authored_documents)
self.assertIn("maxmustermann",
ctrl.unified_name_to_participated_documents)
self.assertIn("heinrichmustermann",
ctrl.unified_name_to_authored_documents)
self.assertIn("heinrichmustermann",
ctrl.unified_name_to_participated_documents)
def test_process_profile_documents(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, self.profile_documents, [])
ctrl.process_profiles()
ctrl.process_profile_documents()
# Check if authored_documents are set correctly
self.assertEqual(len(ctrl.unified_name_to_authored_documents["hansmustermann"]), 1)
self.assertEqual(len(ctrl.unified_name_to_authored_documents["maxmustermann"]), 1)
self.assertEqual(len(ctrl.unified_name_to_authored_documents["heinrichmustermann"]), 1)
self.assertIn("title1", ctrl.unified_name_to_authored_documents["hansmustermann"])
self.assertIn("title2", ctrl.unified_name_to_authored_documents["maxmustermann"])
self.assertIn("title3", ctrl.unified_name_to_authored_documents["heinrichmustermann"])
self.assert_participations(ctrl)
def test_process_profile_documents(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, self.profile_documents, [])
ctrl.process_profiles()
ctrl.process_profile_documents()
# Check if authored_documents are set correctly
self.assertEqual(
len(ctrl.unified_name_to_authored_documents["hansmustermann"]), 1)
self.assertEqual(
len(ctrl.unified_name_to_authored_documents["maxmustermann"]), 1)
self.assertEqual(
len(ctrl.unified_name_to_authored_documents["heinrichmustermann"]),
1)
self.assertIn(
"title1",
ctrl.unified_name_to_authored_documents["hansmustermann"])
self.assertIn("title2",
ctrl.unified_name_to_authored_documents["maxmustermann"])
self.assertIn(
"title3",
ctrl.unified_name_to_authored_documents["heinrichmustermann"])
self.assert_participations(ctrl)
def test_execute(self):
sqlite_in_memory = SQLiteConfiguration("")
data_controller = DataController(sqlite_in_memory)
data_controller.run_schema()
crawler = FileCrawler()
crawl_controller = CrawlController(
crawler, "d0b7f41f-ad37-3b47-ab70-9feac35557cc")
analysis_controller = AnalysisController()
pipeline_controller = PipelineController(
data_controller=data_controller,
crawl_controller=crawl_controller,
analysis_controller=analysis_controller)
# Clean run shall not crash
pipeline_controller.execute()
# Second run shall not crash either
pipeline_controller.execute()
# Third run shall not crash either
pipeline_controller.execute()
def test_analyze_author(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, {}, [])
ctrl.process_profiles()
# Find an existing profile as author of a doc
self.assertEqual(len(ctrl.unified_name_to_participated_documents["hansmustermann"]), 0)
ctrl.analyze_author("doc1", ("Hans", "Mustermann"))
self.assertEqual(len(ctrl.unified_name_to_participated_documents["hansmustermann"]), 1)
self.assertIn("doc1", ctrl.unified_name_to_participated_documents["hansmustermann"])
# Find the same profile in another doc
ctrl.analyze_author("doc2", ("Hans", "Mustermann"))
self.assertEqual(len(ctrl.unified_name_to_participated_documents["hansmustermann"]), 2)
self.assertIn("doc2", ctrl.unified_name_to_participated_documents["hansmustermann"])
# Authored docs are still 0
self.assertEqual(len(ctrl.unified_name_to_authored_documents["hansmustermann"]), 0)
# Find an unknown profile as author of a doc
self.assertNotIn("nichtexistent", ctrl.unified_name_to_participated_documents)
ctrl.analyze_author("doc1", ("Nicht", "Existent"))
self.assertEqual(len(ctrl.unified_name_to_participated_documents["nichtexistent"]), 1)
self.assertIn("nichtexistent", ctrl.unified_name_to_unknown_profile)
self.assertEqual(ctrl.unified_name_to_unknown_profile["nichtexistent"].name, "Nicht Existent")
self.assertEqual(ctrl.unified_name_to_unknown_profile["nichtexistent"].unified_name, "nichtexistent")
def test_analyze_field_tag(self):
ctrl = AnalysisController()
ctrl.prepare([], {}, [])
ctrl.analyze_field_tag("docid1", "t ag-1")
# Check if CacheField for tag1 was created
self.assertTrue(len(ctrl.unified_field_title_to_field), 1)
self.assertEqual("T Ag-1", ctrl.unified_field_title_to_field["tag1"].title)
self.assertEqual("tag1", ctrl.unified_field_title_to_field["tag1"].unified_title)
# Check if document docid1 has been added to tag1
self.assertTrue(len(ctrl.unified_field_title_to_documents), 1)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag1"]), 1)
self.assertIn("docid1", ctrl.unified_field_title_to_documents["tag1"])
# Now add the same tag for the same document (written slightly different)
ctrl.analyze_field_tag("docid1", "t ag - 1")
self.assertTrue(len(ctrl.unified_field_title_to_field), 1)
self.assertEqual("T Ag - 1", ctrl.unified_field_title_to_field["tag1"].title)
self.assertEqual("tag1", ctrl.unified_field_title_to_field["tag1"].unified_title)
# Check if document docid1 is still the only doc
self.assertTrue(len(ctrl.unified_field_title_to_documents), 1)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag1"]), 1)
self.assertIn("docid1", ctrl.unified_field_title_to_documents["tag1"])
# Now add a new document for the same tag (but different field name)
ctrl.analyze_field_tag("docid2", "t -ag - 1")
self.assertTrue(len(ctrl.unified_field_title_to_field), 1)
self.assertEqual("T -Ag - 1", ctrl.unified_field_title_to_field["tag1"].title)
self.assertEqual("tag1", ctrl.unified_field_title_to_field["tag1"].unified_title)
# Check if document docid2 is now linked with tag 1
self.assertTrue(len(ctrl.unified_field_title_to_documents), 1)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag1"]), 2)
self.assertIn("docid1", ctrl.unified_field_title_to_documents["tag1"])
self.assertIn("docid2", ctrl.unified_field_title_to_documents["tag1"])
# Now add an old document with a new tag
ctrl.analyze_field_tag("docid2", "t ag - 2")
self.assertTrue(len(ctrl.unified_field_title_to_field), 2)
self.assertEqual("T Ag - 2", ctrl.unified_field_title_to_field["tag2"].title)
self.assertEqual("tag2", ctrl.unified_field_title_to_field["tag2"].unified_title)
# Check if document docid2 is now linked with tag 2
self.assertTrue(len(ctrl.unified_field_title_to_documents), 2)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag2"]), 1)
self.assertIn("docid2", ctrl.unified_field_title_to_documents["tag2"])
# Now add a new document with a new tag
ctrl.analyze_field_tag("docid3", "t ag - 3")
self.assertTrue(len(ctrl.unified_field_title_to_field), 3)
self.assertEqual("T Ag - 3", ctrl.unified_field_title_to_field["tag3"].title)
self.assertEqual("tag3", ctrl.unified_field_title_to_field["tag3"].unified_title)
# Check if document docid3 is now linked with tag 3
self.assertTrue(len(ctrl.unified_field_title_to_documents), 3)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag3"]), 1)
self.assertIn("docid3", ctrl.unified_field_title_to_documents["tag3"])
def sample_pipeline(app_id=None, app_secret=None):
from mendeleycache.crawler.sdk_crawler import SDKCrawler
sqlite_in_memory = SQLiteConfiguration("")
data_controller = DataController(sqlite_in_memory)
data_controller.run_schema()
crawler = None
if app_id is None and app_secret is None:
crawler = FileCrawler()
else:
crawler = SDKCrawler(app_id=app_id, app_secret=app_secret)
crawl_controller = CrawlController(crawler,
"d0b7f41f-ad37-3b47-ab70-9feac35557cc")
analysis_controller = AnalysisController()
pipeline_controller = PipelineController(
data_controller=data_controller,
crawl_controller=crawl_controller,
analysis_controller=analysis_controller)
# Clean run shall not crash
pipeline_controller.execute()
rows = data_controller.engine.execute("SELECT * FROM profile").fetchall()
print()
print("Profiles:")
for row in rows:
print(row)
rows = data_controller.engine.execute(
"SELECT * FROM cache_profile").fetchall()
print()
print("Cache profiles:")
for row in rows:
print(row)
rows = data_controller.engine.execute(
"SELECT id, owner_mendeley_id, title, authors, tags FROM document"
).fetchall()
print()
print("Documents:")
for row in rows:
print(row)
rows = data_controller.engine.execute(
"SELECT * FROM cache_document").fetchall()
print()
print("Cache documents:")
for row in rows:
print(row)
rows = data_controller.engine.execute(
"SELECT * FROM cache_field").fetchall()
print()
print("Cache fields:")
for row in rows:
print(row)
rows = data_controller.engine.execute(
"SELECT * FROM cache_document_has_cache_field").fetchall()
print()
print("LINK: Cache document -> Cache field:")
for row in rows:
print(row)
rows = data_controller.engine.execute(
"SELECT * FROM cache_profile_has_cache_document").fetchall()
print()
print("LINK: Cache profile -> Cache document:")
for row in rows:
print(row)
print()
crawler = None
if not config.uses_mendeley:
log.info("Pipeline uses FileCrawler")
crawler = FileCrawler()
else:
from mendeleycache.crawler.sdk_crawler import SDKCrawler
log.info("Pipeline uses SDKCrawler".format(
app_id=config.crawler.app_id,
app_secret=config.crawler.app_secret))
crawler = SDKCrawler(app_id=config.crawler.app_id,
app_secret=config.crawler.app_secret)
crawl_controller = CrawlController(crawler,
config.crawler.research_group)
analysis_controller = AnalysisController()
pipeline_controller = PipelineController(
data_controller=data_controller,
crawl_controller=crawl_controller,
analysis_controller=analysis_controller)
pipeline_controller.execute()
# Show file-crawler sample data
elif command == "sample-file-pipeline":
sample_pipeline()
# Trigger the pipeline with the mendeley sdk crawler
elif command == "sample-sdk-pipeline":
if not len(sys.argv) >= 4:
log.critical(
"Missing arguments: mendeleycache.runner sample-sdk-pipeline {app-id} {app-secret}"
def test_analyze_author(self):
ctrl = AnalysisController()
ctrl.prepare(self.profiles, {}, [])
ctrl.process_profiles()
# Find an existing profile as author of a doc
self.assertEqual(
len(ctrl.unified_name_to_participated_documents["hansmustermann"]),
0)
ctrl.analyze_author("doc1", ("Hans", "Mustermann"))
self.assertEqual(
len(ctrl.unified_name_to_participated_documents["hansmustermann"]),
1)
self.assertIn(
"doc1",
ctrl.unified_name_to_participated_documents["hansmustermann"])
# Find the same profile in another doc
ctrl.analyze_author("doc2", ("Hans", "Mustermann"))
self.assertEqual(
len(ctrl.unified_name_to_participated_documents["hansmustermann"]),
2)
self.assertIn(
"doc2",
ctrl.unified_name_to_participated_documents["hansmustermann"])
# Authored docs are still 0
self.assertEqual(
len(ctrl.unified_name_to_authored_documents["hansmustermann"]), 0)
# Find an unknown profile as author of a doc
self.assertNotIn("nichtexistent",
ctrl.unified_name_to_participated_documents)
ctrl.analyze_author("doc1", ("Nicht", "Existent"))
self.assertEqual(
len(ctrl.unified_name_to_participated_documents["nichtexistent"]),
1)
self.assertIn("nichtexistent", ctrl.unified_name_to_unknown_profile)
self.assertEqual(
ctrl.unified_name_to_unknown_profile["nichtexistent"].name,
"Nicht Existent")
self.assertEqual(
ctrl.unified_name_to_unknown_profile["nichtexistent"].unified_name,
"nichtexistent")
def test_analyze_field_tag(self):
ctrl = AnalysisController()
ctrl.prepare([], {}, [])
ctrl.analyze_field_tag("docid1", "t ag-1")
# Check if CacheField for tag1 was created
self.assertTrue(len(ctrl.unified_field_title_to_field), 1)
self.assertEqual("T Ag-1",
ctrl.unified_field_title_to_field["tag1"].title)
self.assertEqual(
"tag1", ctrl.unified_field_title_to_field["tag1"].unified_title)
# Check if document docid1 has been added to tag1
self.assertTrue(len(ctrl.unified_field_title_to_documents), 1)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag1"]), 1)
self.assertIn("docid1", ctrl.unified_field_title_to_documents["tag1"])
# Now add the same tag for the same document (written slightly different)
ctrl.analyze_field_tag("docid1", "t ag - 1")
self.assertTrue(len(ctrl.unified_field_title_to_field), 1)
self.assertEqual("T Ag - 1",
ctrl.unified_field_title_to_field["tag1"].title)
self.assertEqual(
"tag1", ctrl.unified_field_title_to_field["tag1"].unified_title)
# Check if document docid1 is still the only doc
self.assertTrue(len(ctrl.unified_field_title_to_documents), 1)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag1"]), 1)
self.assertIn("docid1", ctrl.unified_field_title_to_documents["tag1"])
# Now add a new document for the same tag (but different field name)
ctrl.analyze_field_tag("docid2", "t -ag - 1")
self.assertTrue(len(ctrl.unified_field_title_to_field), 1)
self.assertEqual("T -Ag - 1",
ctrl.unified_field_title_to_field["tag1"].title)
self.assertEqual(
"tag1", ctrl.unified_field_title_to_field["tag1"].unified_title)
# Check if document docid2 is now linked with tag 1
self.assertTrue(len(ctrl.unified_field_title_to_documents), 1)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag1"]), 2)
self.assertIn("docid1", ctrl.unified_field_title_to_documents["tag1"])
self.assertIn("docid2", ctrl.unified_field_title_to_documents["tag1"])
# Now add an old document with a new tag
ctrl.analyze_field_tag("docid2", "t ag - 2")
self.assertTrue(len(ctrl.unified_field_title_to_field), 2)
self.assertEqual("T Ag - 2",
ctrl.unified_field_title_to_field["tag2"].title)
self.assertEqual(
"tag2", ctrl.unified_field_title_to_field["tag2"].unified_title)
# Check if document docid2 is now linked with tag 2
self.assertTrue(len(ctrl.unified_field_title_to_documents), 2)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag2"]), 1)
self.assertIn("docid2", ctrl.unified_field_title_to_documents["tag2"])
# Now add a new document with a new tag
ctrl.analyze_field_tag("docid3", "t ag - 3")
self.assertTrue(len(ctrl.unified_field_title_to_field), 3)
self.assertEqual("T Ag - 3",
ctrl.unified_field_title_to_field["tag3"].title)
self.assertEqual(
"tag3", ctrl.unified_field_title_to_field["tag3"].unified_title)
# Check if document docid3 is now linked with tag 3
self.assertTrue(len(ctrl.unified_field_title_to_documents), 3)
self.assertTrue(len(ctrl.unified_field_title_to_documents["tag3"]), 1)
self.assertIn("docid3", ctrl.unified_field_title_to_documents["tag3"])
