def test_load_meta():
data, meta = load('test/resources/input')
assert meta['nrois'] == 9
assert len(meta['rois']) == 9
assert meta['nplanes'] == 1
assert meta['nchannels'] == 1
assert meta['shape'] == (23, 5152, 64)
def test_convert_meta():
data, meta = load('test/resources/input')
newdata, newmeta = convert(data, meta)
assert newmeta['nrois'] == 1
assert len(newmeta['rois']) == 1
assert newmeta['nplanes'] == 1
assert newmeta['nchannels'] == 1
assert newmeta['shape'] == (23, 464, 576)
def test_convert_ground_truth():
data, meta = load('test/resources/input')
newdata, newmeta = convert(data, meta)
truth = fromtif('test/resources/output')
assert newdata.shape == truth.shape
assert allclose(newdata.clip(0, inf), truth)
def test_convert_data_array():
data, meta = load('test/resources/input')
newdata, newmeta = convert(data.toarray(), meta)
assert newdata.shape == (23, 464, 576)
def test_convert_data():
data, meta = load('test/resources/input')
newdata, newmeta = convert(data, meta)
assert newdata.shape == (23, 464, 576)
assert newdata.dtype == 'int16'
def test_load_data():
data, meta = load('test/resources/input')
assert data.shape == (23, 5152, 64)
import mesoscope as ms
data, metadata = ms.load('test/resources/input')
newdata, newmetadata = ms.convert(data, metadata)
print('shape before conversion')
print(data.shape)
print('shape after conversion')
print(newdata.shape)