def test_F1A_biotools_none(self):
metric_f1a = FAIRMetricsFactory.get_F1A(impl=Implem.FAIR_CHECKER)
web_resource = WebResource("https://bio.tools/bwa")
metric_f1a.set_web_resource(web_resource)
print(metric_f1a)
res = metric_f1a.evaluate()
logging.info(res)
self.assertEqual(res.get_score(), str(Result.STRONG.value))
def test_F1A_dataverse(self):
dataverse = WebResource(
# "https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/P27LDX"
"https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/DOMEHB"
# "https://data.inrae.fr/api/datasets/export?exporter=schema.org&persistentId=doi%3A10.15454/DOMEHB"
)
res = FAIRMetricsFactory.get_F1A(web_resource=dataverse,
impl=Implem.FAIR_CHECKER).evaluate()
logging.info(res)
self.assertEqual(res.get_score(), str(Result.STRONG.value))
def eval_metrics(web_res):
metrics_collection = []
metrics_collection.append(FAIRMetricsFactory.get_F1A(web_res))
metrics_collection.append(FAIRMetricsFactory.get_F1B(web_res))
metrics_collection.append(FAIRMetricsFactory.get_F2A(web_res))
metrics_collection.append(FAIRMetricsFactory.get_I1(web_res))
# metrics_collection.append(FAIRMetricsFactory.get_I2(web_res))
metrics_collection.append(FAIRMetricsFactory.get_I3(web_res))
metrics_collection.append(FAIRMetricsFactory.get_R11(web_res))
metrics_collection.append(FAIRMetricsFactory.get_R12(web_res))
# metrics_collection.append(FAIRMetricsFactory.get_R13(web_res))
row = {"ID": web_res.get_url()}
row_time = {"ID": web_res.get_url()}
for m in metrics_collection:
ts1 = time.time()
e = m.evaluate()
duration = round((time.time() - ts1), 2)
if e is not None:
row[m.get_principle_tag()] = e.get_score()
row_time[m.get_principle_tag()] = duration
return row, row_time
def test_F1A_biotools(self):
biotools = FindabilityTestCase.tool
res = FAIRMetricsFactory.get_F1A(web_resource=biotools,
impl=Implem.FAIR_CHECKER).evaluate()
logging.info(res)
self.assertEqual(res.get_score(), str(Result.STRONG.value))