for orga in h1.organelles:
# create master for organelle
bg = bl.newEmpty('organelle_%d'%orga.number)
g = Geom('organelle_%d'%orga.number)
bl.addObjectToScene(sc,bg)
gs = Geom('surface')
bgs = bl.newEmpty('surface')
bl.addObjectToScene(sc,bgs, parent=bg)
gc = Geom('cytoplasm')
bgc = bl.newEmpty('cytoplasm')
bl.addObjectToScene(sc,bgc, parent=bg)
orgaToMasterGeom[orga] = g
orgaToMasterGeom[orga.number] = gs
orgaToMasterGeom[-orga.number] = gc
tetobj,tetmesh = bl.createsNmesh('surfaceMesh',orga.vertices,orga.vnormals,orga.faces)
tetobj.setMaterials([Material.Get("wire")])
tetobj.colbits = 1<<0 #objMAt
tetobj.setDrawMode(32)#drawwire
tetobj.setDrawType(2)#wire
#tet = IndexedPolygons('surfaceMesh', vertices=orga.vertices,
# faces=orga.faces, normals=orga.vnormals,
# inheritFrontPolyMode=False,
# frontPolyMode='line',
# inheritCulling=0, culling='none',
# inheritShading=0, shading='flat')
#vi.AddObject(tet, parent=g)
bl.addObjectToScene(sc,tetobj, parent=bg)
#cp = vi.clipP[0]
#vi.GUI.clipvar[0][0].set(1)
#sph = Spheres('spheres', inheritMaterial=False, centers=verts1,
# materials=colors1, radii=radii1, visible=1)
#vi.AddObject(sph, parent=master)
# display extra cellular meshes
meshGeoms = {}
for pos, rot, ingr, ptInd in h1.molecules:
if ingr.mesh: # display mesh
geom = ingr.mesh
mat = rot.copy()
mat[:3, 3] = pos
if not meshGeoms.has_key(geom):
meshGeoms[geom] = [mat]
geom.Set(materials = [ingr.color], inheritMaterial=0)
#create the mesh
geom.ob,geom.mesh = bl.createsNmesh(geom.name,geom.getVertices(),None,geom.getFaces(),
color=[ingr.color],smooth=False,proxyCol=False)
else:
meshGeoms[geom].append(mat)
for geom, mats in meshGeoms.items():
instancesExtra = []
for i,mat in enumerate(mats):
instancesExtra.append(bl.setInstance(geom.name+str(i),geom.ob, mat))
bl.addObjectToScene(sc,instancesExtra[-1], parent=bg)
# display organelle spheres
for orga in h1.organelles:
vertsIn = []
radiiIn = []
colorsIn =[]
# display extra cellular meshes
meshGeoms = {}
for pos, rot, ingr, ptInd in h1.molecules:
if ingr.mesh: # display mesh
geom = ingr.mesh
mat = rot.copy()
mat[:3, 3] = pos
if geom not in meshGeoms:
meshGeoms[geom] = [mat]
geom.Set(materials=[ingr.color], inheritMaterial=0)
#create the mesh
geom.ob, geom.mesh = bl.createsNmesh(geom.name,
geom.getVertices(),
None,
geom.getFaces(),
color=[ingr.color],
smooth=False,
proxyCol=False)
else:
meshGeoms[geom].append(mat)
for geom, mats in list(meshGeoms.items()):
instancesExtra = []
for i, mat in enumerate(mats):
instancesExtra.append(bl.setInstance(geom.name + str(i), geom.ob, mat))
bl.addObjectToScene(sc, instancesExtra[-1], parent=bg)
# display organelle spheres
for orga in h1.organelles:
vertsIn = []