def test_madeline_run(ped):
output = madeline.run(ped, exe=MADELINE_EXE)
assert output
# test with missing executable
with pytest.raises(MadelineExecutableNotFoundError):
madeline.run(ped, exe="/tmp/bin/madeline2NotHere")
# fail to auto-find executable in $PATH
with pytest.raises(MadelineExecutableNotFoundError):
madeline.run(ped)
def test_madeline_run_one_individual():
with open("tests/fixtures/family-one.ped") as handle:
ped = FamilyParser(handle, family_type="alt")
with pytest.raises(SinglePedigreeError):
madeline.run(ped, exe=MADELINE_EXE)
def run_madeline(mip_case, madeline_exe):
"""Run and process madeline."""
external_individuals = madeline.external_ped(mip_case.ped.individuals)
mip_case.ped.families[mip_case.family_id].individuals = external_individuals
svg_content = madeline.run(mip_case.ped, exe=madeline_exe)
return svg_content