def testGetAdjacentCategories(self):
"""Test case -"""
try:
myIo = IoAdapter(raiseExceptions=True)
self.__containerList = myIo.readFile(inputFilePath=self.__pathPdbxDictionary)
dApi = DictionaryApi(containerList=self.__containerList, consolidate=True, verbose=self.__verbose)
cList = dApi.getCategoryList()
cI = {}
for cV in cList:
chL = dApi.getChildCategories(cV)
pL = dApi.getParentCategories(cV)
for ch in chL:
if (ch, cV) not in cI:
cI[(ch, cV)] = 1
else:
cI[(ch, cV)] += 1
for pV in pL:
if (cV, pV) not in cI:
cI[(cV, pV)] = 1
else:
cI[(cV, pV)] += 1
linkL = []
for tup in cI:
dD = {"source": tup[0], "target": tup[1], "type": "link"}
linkL.append(dD)
if self.__verbose:
print(json.dumps(linkL, sort_keys=True, indent=4, separators=(",", ": ")))
self.assertGreater(len(linkL), 50)
except Exception as e:
logger.exception("Failing with %s", str(e))
self.fail()
def test_get_adjacent_categories(self, api_paths):
myIo = IoAdapter(raiseExceptions=True)
containerList = myIo.readFile(
inputFilePath=str(api_paths['pathPdbxDictionary']))
dApi = DictionaryApi(containerList=containerList, consolidate=True)
cList = dApi.getCategoryList()
cI = {}
for c in cList:
chL = dApi.getChildCategories(c)
pL = dApi.getParentCategories(c)
for ch in chL:
if (ch, c) not in cI:
cI[(ch, c)] = 1
else:
cI[(ch, c)] += 1
for p in pL:
if (c, p) not in cI:
cI[(c, p)] = 1
else:
cI[(c, p)] += 1
linkL = []
for s, t in cI.keys():
d = {'source': s, 'target': t, 'type': 'link'}
linkL.append(d)
assert len(linkL) > 50