def delete_sample_additional(sample_id, additional_id):
from run import config
sample = Sample.query.filter(Sample.id == sample_id).first()
if sample is not None:
# Fetch additional info
extra = ExtraFile.query.filter(ExtraFile.id == additional_id).first()
if extra is not None:
# Process or render form
form = DeleteAdditionalSampleForm(request.form)
if form.validate_on_submit():
basedir = os.path.join(
config.get('SAMPLE_REPOSITORY', ''), 'TestFiles')
os.remove(os.path.join(basedir, 'extra', extra.filename))
g.db.delete(extra)
g.db.commit()
return redirect(url_for('.sample_by_id', sample_id=sample.id))
return {
'sample': sample,
'extra': extra,
'form': form
}
raise SampleNotFoundException('Extra file %s for sample %s not '
'found' % (additional_id, sample.id))
raise SampleNotFoundException('Sample with id %s not found' % sample_id)
def delete_sample_additional(sample_id, additional_id):
"""
Delete sample's additional, required admin role.
:param sample_id: id of the sample
:type sample_id: int
:param additional_id: id of the sample's additional
:type additional_id: int
:raises SampleNotFoundException: when sample id is not found
:return: form to edit sample
:rtype: dict
"""
from run import config
sample = Sample.query.filter(Sample.id == sample_id).first()
if sample is not None:
extra = ExtraFile.query.filter(ExtraFile.id == additional_id).first()
if extra is not None:
form = DeleteAdditionalSampleForm(request.form)
if form.validate_on_submit():
basedir = os.path.join(config.get('SAMPLE_REPOSITORY', ''),
'TestFiles')
os.remove(os.path.join(basedir, 'extra', extra.filename))
g.db.delete(extra)
g.db.commit()
g.log.warning(
f"additional with id: {additional_id} for sample with id: {sample_id} deleted"
)
return redirect(url_for('.sample_by_id', sample_id=sample.id))
return {'sample': sample, 'extra': extra, 'form': form}
raise SampleNotFoundException(
f"Extra file {additional_id} for sample {sample.id} not found")
raise SampleNotFoundException(f"Sample with id {sample_id} not found")
def delete_sample_additional(sample_id, additional_id):
from run import config
sample = Sample.query.filter(Sample.id == sample_id).first()
if sample is not None:
# Fetch additional info
extra = ExtraFile.query.filter(ExtraFile.id == additional_id).first()
if extra is not None:
# Process or render form
form = DeleteAdditionalSampleForm(request.form)
if form.validate_on_submit():
basedir = os.path.join(config.get('SAMPLE_REPOSITORY', ''), 'TestFiles')
os.remove(os.path.join(basedir, 'extra', extra.filename))
g.db.delete(extra)
g.db.commit()
return redirect(url_for('.sample_by_id', sample_id=sample.id))
return {
'sample': sample,
'extra': extra,
'form': form
}
raise SampleNotFoundException('Extra file {f_id} for sample {s_id} not found'.format(
f_id=additional_id, s_id=sample.id))
raise SampleNotFoundException('Sample with id {id} not found'.format(id=sample_id))