class OsfStorageFileVersion(StoredObject):
"""A version of an OsfStorageFileNode. contains information
about where the file is located, hashes and datetimes
"""
_id = fields.StringField(primary=True,
default=lambda: str(bson.ObjectId()))
creator = fields.ForeignField('user', required=True)
# Date version record was created. This is the date displayed to the user.
date_created = fields.DateTimeField(auto_now_add=True)
# Dictionary specifying all information needed to locate file on backend
# {
# 'service': 'cloudfiles', # required
# 'container': 'osf', # required
# 'object': '20c53b', # required
# 'worker_url': '127.0.0.1',
# 'worker_host': 'upload-service-1',
# }
location = fields.DictionaryField(validate=utils.validate_location)
# Dictionary containing raw metadata from upload service response
# {
# 'size': 1024, # required
# 'content_type': 'text/plain', # required
# 'date_modified': '2014-11-07T20:24:15', # required
# 'md5': 'd077f2',
# }
metadata = fields.DictionaryField()
size = fields.IntegerField()
content_type = fields.StringField()
# Date file modified on third-party backend. Not displayed to user, since
# this date may be earlier than the date of upload if the file already
# exists on the backend
date_modified = fields.DateTimeField()
@property
def location_hash(self):
return self.location['object']
def is_duplicate(self, other):
return self.location_hash == other.location_hash
def update_metadata(self, metadata):
self.metadata.update(metadata)
self.content_type = self.metadata.get('contentType', None)
try:
self.size = self.metadata['size']
self.date_modified = parse_date(self.metadata['modified'],
ignoretz=True)
except KeyError as err:
raise errors.MissingFieldError(str(err))
self.save()
class Conference(StoredObject):
#: Determines the email address for submission and the OSF url
# Example: If endpoint is spsp2014, then submission email will be
# [email protected] or [email protected] and the OSF url will
# be osf.io/view/spsp2014
endpoint = fields.StringField(primary=True, required=True, unique=True)
#: Full name, e.g. "SPSP 2014"
name = fields.StringField(required=True)
info_url = fields.StringField(required=False, default=None)
logo_url = fields.StringField(required=False, default=None)
location = fields.StringField(required=False, default=None)
start_date = fields.DateTimeField(default=None)
end_date = fields.DateTimeField(default=None)
active = fields.BooleanField(required=True)
admins = fields.ForeignField('user', list=True, required=False, default=None)
#: Whether to make submitted projects public
public_projects = fields.BooleanField(required=False, default=True)
poster = fields.BooleanField(default=True)
talk = fields.BooleanField(default=True)
# field_names are used to customize the text on the conference page, the categories
# of submissions, and the email adress to send material to.
field_names = fields.DictionaryField(default=lambda: DEFAULT_FIELD_NAMES)
# Cached number of submissions
num_submissions = fields.IntegerField(default=0)
@classmethod
def get_by_endpoint(cls, endpoint, active=True):
query = Q('endpoint', 'iexact', endpoint)
if active:
query &= Q('active', 'eq', True)
try:
return Conference.find_one(query)
except ModularOdmException:
raise ConferenceError('Endpoint {0} not found'.format(endpoint))
class ArchiveTarget(StoredObject):
"""Stores the results of archiving a single addon
"""
_id = fields.StringField(
primary=True,
default=lambda: str(ObjectId())
)
# addon_short_name of target addon
name = fields.StringField()
status = fields.StringField(default=ARCHIVER_INITIATED)
# <dict> representation of a website.archiver.AggregateStatResult
# Format: {
# 'target_id': <str>,
# 'target_name': <str>,
# 'targets': <list>(StatResult | AggregateStatResult),
# 'num_files': <int>,
# 'disk_usage': <float>,
# }
stat_result = fields.DictionaryField()
errors = fields.StringField(list=True)
def __repr__(self):
return '<{0}(_id={1}, name={2}, status={3})>'.format(
self.__class__.__name__,
self._id,
self.name,
self.status
)
class OsfStorageFileVersion(StoredObject):
_id = oid_primary_key
creator = fields.ForeignField('user', required=True)
date_created = fields.DateTimeField(auto_now_add=True)
# Dictionary specifying all information needed to locate file on backend
# {
# 'service': 'buttfiles', # required
# 'container': 'osf', # required
# 'object': '20c53b', # required
# 'worker_url': '127.0.0.1',
# 'worker_host': 'upload-service-1',
# }
location = fields.DictionaryField(validate=validate_location)
# Dictionary containing raw metadata from upload service response
# {
# 'size': 1024, # required
# 'content_type': 'text/plain', # required
# 'date_modified': '2014-11-07T20:24:15', # required
# 'md5': 'd077f2',
# }
metadata = fields.DictionaryField()
size = fields.IntegerField()
content_type = fields.StringField()
date_modified = fields.DateTimeField()
@property
def location_hash(self):
return self.location['object']
def is_duplicate(self, other):
return self.location_hash == other.location_hash
def update_metadata(self, metadata):
self.metadata.update(metadata)
for key, parser in metadata_fields.iteritems():
try:
value = metadata[key]
except KeyError:
raise errors.MissingFieldError
setattr(self, key, parser(value))
self.save()
class BadgesUserSettings(AddonUserSettingsBase):
revocation_list = fields.DictionaryField(
) # {'id':'12345', 'reason':'is a loser'}
@property
def can_award(self):
return bool(self.badges) or len(Badge.get_system_badges()) > 0
@property
def badges(self):
return list(Badge.find(Q('creator', 'eq', self._id))) + [
badge
for badge in Badge.get_system_badges() if badge.creator != self
]
@property
def issued(self):
assertions = []
for badge in self.badges:
for assertion in badge.assertions:
if assertion.awarder == self:
assertions.append(assertion)
return assertions
def get_badges_json(self):
return [badge.to_json() for badge in self.badges]
def get_badges_json_simple(self):
return [{
'value': badge._id,
'text': badge.name
} for badge in self.badges]
def to_json(self, user):
ret = super(BadgesUserSettings, self).to_json(user)
ret['badges'] = self.get_badges_json()
return ret
def to_openbadge(self):
ret = {
'name': self.owner.fullname,
'email': self.owner.username,
}
# Place holder for later when orgaizations get worked on
# if self.description:
# ret['description'] = self.description,
# if self.image:
# ret['image'] = self.image,
# if self.url:
# ret['url'] = self.url
# if self.revocation_list:
# ret['revocationList'] = self.revocation_list
return ret
def issued_json(self):
return [assertion.to_json() for assertion in self.issued]
class Session(StoredObject):
_id = fields.StringField(primary=True, default=lambda: str(ObjectId()))
date_created = fields.DateTimeField(auto_now_add=True)
date_modified = fields.DateTimeField(auto_now=True)
data = fields.DictionaryField()
@property
def is_authenticated(self):
return 'auth_user_id' in self.data
class Conference(StoredObject):
#: Determines the email address for submission and the OSF url
# Example: If endpoint is spsp2014, then submission email will be
# [email protected] or [email protected] and the OSF url will
# be osf.io/view/spsp2014
endpoint = fields.StringField(primary=True, required=True, unique=True)
#: Full name, e.g. "SPSP 2014"
name = fields.StringField(required=True)
info_url = fields.StringField(required=False, default=None)
logo_url = fields.StringField(required=False, default=None)
active = fields.BooleanField(required=True)
admins = fields.ForeignField('user',
list=True,
required=False,
default=None)
#: Whether to make submitted projects public
public_projects = fields.BooleanField(required=False, default=True)
poster = fields.BooleanField(default=True)
talk = fields.BooleanField(default=True)
# field_names are used to customize the text on the conference page, the categories
# of submissions, and the email adress to send material to.
field_names = fields.DictionaryField(
default=lambda: {
'submission1':
'poster',
'submission2':
'talk',
'submission1_plural':
'posters',
'submission2_plural':
'talks',
'meeting_title_type':
'Posters & Talks',
'add_submission':
'poster or talk',
'mail_subject':
'Presentation title',
'mail_message_body':
'Presentation abstract (if any)',
'mail_attachment':
'Your presentation file (e.g., PowerPoint, PDF, etc.)'
})
# Cached number of submissions
num_submissions = fields.IntegerField(default=0)
@classmethod
def get_by_endpoint(cls, endpoint, active=True):
query = Q('endpoint', 'iexact', endpoint)
if active:
query &= Q('active', 'eq', True)
try:
return Conference.find_one(query)
except ModularOdmException:
raise ConferenceError('Endpoint {0} not found'.format(endpoint))
class TrashedFileNode(StoredObject):
"""The graveyard for all deleted FileNodes"""
_id = fields.StringField(primary=True)
last_touched = fields.DateTimeField()
history = fields.DictionaryField(list=True)
versions = fields.ForeignField('FileVersion', list=True)
node = fields.ForeignField('node', required=True)
parent = fields.AbstractForeignField(default=None)
is_file = fields.BooleanField(default=True)
provider = fields.StringField(required=True)
name = fields.StringField(required=True)
path = fields.StringField(required=True)
materialized_path = fields.StringField(required=True)
checkout = fields.AbstractForeignField('User')
deleted_by = fields.AbstractForeignField('User')
deleted_on = fields.DateTimeField(auto_now_add=True)
tags = fields.ForeignField('Tag', list=True)
@property
def deep_url(self):
"""Allows deleted files to resolve to a view
that will provide a nice error message and http.GONE
"""
return self.node.web_url_for('addon_deleted_file', trashed_id=self._id)
def restore(self, recursive=True, parent=None):
"""Recreate a StoredFileNode from the data in this object
Will re-point all guids and finally remove itself
:raises KeyExistsException:
"""
data = self.to_storage()
data.pop('deleted_on')
data.pop('deleted_by')
if parent:
data['parent'] = parent._id
elif data['parent']:
# parent is an AbstractForeignField, so it gets stored as tuple
data['parent'] = data['parent'][0]
restored = FileNode.resolve_class(self.provider,
int(self.is_file))(**data)
if not restored.parent:
raise ValueError('No parent to restore to')
restored.save()
if recursive:
for child in TrashedFileNode.find(Q('parent', 'eq', self)):
child.restore(recursive=recursive, parent=restored)
TrashedFileNode.remove_one(self)
return restored
class QueuedMail(StoredObject):
_id = fields.StringField(primary=True, default=lambda: str(bson.ObjectId()))
user = fields.ForeignField('User', index=True, required=True)
to_addr = fields.StringField()
send_at = fields.DateTimeField(index=True, required=True)
# string denoting the template, presend to be used. Has to be an index of queue_mail types
email_type = fields.StringField(index=True, required=True)
# dictionary with variables used to populate mako template and store information used in presends
# Example:
# self.data = {
# 'nid' : 'ShIpTo',
# 'fullname': 'Florence Welch',
#}
data = fields.DictionaryField()
sent_at = fields.DateTimeField(index=True)
def send_mail(self):
"""
Grabs the data from this email, checks for user subscription to help mails,
constructs the mail object and checks presend. Then attempts to send the email
through send_mail()
:return: boolean based on whether email was sent.
"""
mail_struct = queue_mail_types[self.email_type]
presend = mail_struct['presend'](self)
mail = Mail(
mail_struct['template'],
subject=mail_struct['subject'],
categories=mail_struct.get('categories', None)
)
self.data['osf_url'] = settings.DOMAIN
if presend and self.user.is_active and self.user.osf_mailing_lists.get(settings.OSF_HELP_LIST):
send_mail(self.to_addr or self.user.username, mail, mimetype='html', **(self.data or {}))
self.sent_at = datetime.utcnow()
self.save()
return True
else:
self.__class__.remove_one(self)
return False
def find_sent_of_same_type_and_user(self):
"""
Queries up for all emails of the same type as self, sent to the same user as self.
Does not look for queue-up emails.
:return: a list of those emails
"""
return self.__class__.find(
Q('email_type', 'eq', self.email_type) &
Q('user', 'eq', self.user) &
Q('sent_at', 'ne', None)
)
class Session(StoredObject):
_id = fields.StringField(primary=True, default=lambda: str(ObjectId()))
date_created = fields.DateTimeField(auto_now_add=True)
date_modified = fields.DateTimeField(auto_now=True)
data = fields.DictionaryField()
def __init__(self, *args, **kwargs):
super(Session, self).__init__(*args, **kwargs)
# Initialize history to empty list if not found
if 'history' not in self.data:
self.data['history'] = []
class TrashedFileNode(StoredObject):
"""The graveyard for all deleted FileNodes"""
_id = fields.StringField(primary=True)
last_touched = fields.DateTimeField()
history = fields.DictionaryField(list=True)
versions = fields.ForeignField('FileVersion', list=True)
node = fields.ForeignField('node', required=True)
parent = fields.AbstractForeignField(default=None)
is_file = fields.BooleanField(default=True)
provider = fields.StringField(required=True)
name = fields.StringField(required=True)
path = fields.StringField(required=True)
materialized_path = fields.StringField(required=True)
checkout = fields.AbstractForeignField('User')
deleted_by = fields.AbstractForeignField('User')
deleted_on = fields.DateTimeField(auto_now_add=True)
@property
def deep_url(self):
"""Allows deleted files to resolve to a view
that will provide a nice error message and http.GONE
"""
return self.node.web_url_for('addon_deleted_file', trashed_id=self._id)
def restore(self):
"""Recreate a StoredFileNode from the data in this object
Will re-point all guids and finally remove itself
:raises KeyExistsException:
"""
data = self.to_storage()
data.pop('deleted_on')
data.pop('deleted_by')
restored = FileNode.resolve_class(self.provider,
int(self.is_file))(**data)
restored.save()
TrashedFileNode.remove_one(self)
return restored
class DropboxUserSettings(AddonUserSettingsBase):
"""Stores user-specific dropbox information, including the Oauth access
token.
"""
dropbox_id = fields.StringField(required=False)
access_token = fields.StringField(required=False)
dropbox_info = fields.DictionaryField(required=False)
# TODO(sloria): The `user` param in unnecessary for AddonUserSettings
def to_json(self, user=None):
"""Return a dictionary representation of the user settings.
The dictionary keys and values will be available as variables in
dropbox_user_settings.mako.
"""
output = super(DropboxUserSettings, self).to_json(self.owner)
output['has_auth'] = self.has_auth
return output
@property
def has_auth(self):
return bool(self.access_token)
def delete(self, save=True):
self.clear()
super(DropboxUserSettings, self).delete(save)
def clear(self):
"""Clear settings and deauthorize any associated nodes."""
self.dropbox_id = None
self.access_token = None
for node_settings in self.dropboxnodesettings__authorized:
node_settings.deauthorize(Auth(self.owner))
node_settings.save()
return self
def __repr__(self):
return u'<DropboxUserSettings(user={self.owner.username!r})>'.format(
self=self)
class DropboxNodeSettings(AddonNodeSettingsBase):
user_settings = fields.ForeignField('dropboxusersettings',
backref='authorized')
folder = fields.StringField(default=None)
#: Information saved at the time of registration
#: Note: This is unused right now
registration_data = fields.DictionaryField()
@property
def display_name(self):
return '{0}: {1}'.format(self.config.full_name, self.folder)
@property
def complete(self):
return self.has_auth and self.folder is not None
@property
def has_auth(self):
"""Whether an access token is associated with this node."""
return bool(self.user_settings and self.user_settings.has_auth)
def find_or_create_file_guid(self, path):
return DropboxFile.get_or_create(
self.owner, clean_path(os.path.join(self.folder,
path.lstrip('/'))))
def set_folder(self, folder, auth):
self.folder = folder
# Add log to node
nodelogger = DropboxNodeLogger(node=self.owner, auth=auth)
nodelogger.log(action="folder_selected", save=True)
def set_user_auth(self, user_settings):
"""Import a user's Dropbox authentication and create a NodeLog.
:param DropboxUserSettings user_settings: The user settings to link.
"""
self.user_settings = user_settings
nodelogger = DropboxNodeLogger(node=self.owner,
auth=Auth(user_settings.owner))
nodelogger.log(action="node_authorized", save=True)
# TODO: Is this used? If not, remove this and perhaps remove the 'deleted' field
def delete(self, save=True):
self.deauthorize(add_log=False)
super(DropboxNodeSettings, self).delete(save)
def deauthorize(self, auth=None, add_log=True):
"""Remove user authorization from this node and log the event."""
node = self.owner
folder = self.folder
self.folder = None
self.user_settings = None
if add_log:
extra = {'folder': folder}
nodelogger = DropboxNodeLogger(node=node, auth=auth)
nodelogger.log(action="node_deauthorized", extra=extra, save=True)
def serialize_waterbutler_credentials(self):
if not self.has_auth:
raise exceptions.AddonError('Addon is not authorized')
return {'token': self.user_settings.access_token}
def serialize_waterbutler_settings(self):
if not self.folder:
raise exceptions.AddonError('Folder is not configured')
return {'folder': self.folder}
def create_waterbutler_log(self, auth, action, metadata):
cleaned_path = clean_path(os.path.join(self.folder, metadata['path']))
url = self.owner.web_url_for('addon_view_or_download_file',
path=cleaned_path,
provider='dropbox')
self.owner.add_log(
'dropbox_{0}'.format(action),
auth=auth,
params={
'project': self.owner.parent_id,
'node': self.owner._id,
'path': cleaned_path,
'folder': self.folder,
'urls': {
'view': url,
'download': url + '?action=download'
},
},
)
def __repr__(self):
return u'<DropboxNodeSettings(node_id={self.owner._primary_key!r})>'.format(
self=self)
##### Callback overrides #####
def before_register_message(self, node, user):
"""Return warning text to display if user auth will be copied to a
registration.
"""
category = node.project_or_component
if self.user_settings and self.user_settings.has_auth:
return (
u'The contents of Dropbox add-ons cannot be registered at this time; '
u'the Dropbox folder linked to this {category} will not be included '
u'as part of this registration.').format(**locals())
# backwards compatibility
before_register = before_register_message
def before_fork_message(self, node, user):
"""Return warning text to display if user auth will be copied to a
fork.
"""
category = node.project_or_component
if self.user_settings and self.user_settings.owner == user:
return (
u'Because you have authorized the Dropbox add-on for this '
'{category}, forking it will also transfer your authentication token to '
'the forked {category}.').format(category=category)
else:
return (
u'Because the Dropbox add-on has been authorized by a different '
'user, forking it will not transfer authentication token to the forked '
'{category}.').format(category=category)
# backwards compatibility
before_fork = before_fork_message
def before_remove_contributor_message(self, node, removed):
"""Return warning text to display if removed contributor is the user
who authorized the Dropbox addon
"""
if self.user_settings and self.user_settings.owner == removed:
category = node.project_or_component
name = removed.fullname
return (
u'The Dropbox add-on for this {category} is authenticated by {name}. '
'Removing this user will also remove write access to Dropbox '
'unless another contributor re-authenticates the add-on.'
).format(**locals())
# backwards compatibility
before_remove_contributor = before_remove_contributor_message
# Note: Registering Dropbox content is disabled for now; leaving this code
# here in case we enable registrations later on.
# @jmcarp
# def after_register(self, node, registration, user, save=True):
# """After registering a node, copy the user settings and save the
# chosen folder.
#
# :return: A tuple of the form (cloned_settings, message)
# """
# clone, message = super(DropboxNodeSettings, self).after_register(
# node, registration, user, save=False
# )
# # Copy user_settings and add registration data
# if self.has_auth and self.folder is not None:
# clone.user_settings = self.user_settings
# clone.registration_data['folder'] = self.folder
# if save:
# clone.save()
# return clone, message
def after_fork(self, node, fork, user, save=True):
"""After forking, copy user settings if the user is the one who authorized
the addon.
:return: A tuple of the form (cloned_settings, message)
"""
clone, _ = super(DropboxNodeSettings, self).after_fork(node=node,
fork=fork,
user=user,
save=False)
if self.user_settings and self.user_settings.owner == user:
clone.user_settings = self.user_settings
message = ('Dropbox authorization copied to forked {cat}.').format(
cat=fork.project_or_component)
else:
message = (
u'Dropbox authorization not copied to forked {cat}. You may '
'authorize this fork on the <a href="{url}">Settings</a> '
'page.').format(url=fork.web_url_for('node_setting'),
cat=fork.project_or_component)
if save:
clone.save()
return clone, message
def after_remove_contributor(self, node, removed, auth=None):
"""If the removed contributor was the user who authorized the Dropbox
addon, remove the auth credentials from this node.
Return the message text that will be displayed to the user.
"""
if self.user_settings and self.user_settings.owner == removed:
self.user_settings = None
self.save()
message = (
u'Because the Dropbox add-on for {category} "{title}" was authenticated '
u'by {user}, authentication information has been deleted.'
).format(category=node.category_display,
title=node.title,
user=removed.fullname)
if not auth or auth.user != removed:
url = node.web_url_for('node_setting')
message += (
u' You can re-authenticate on the <a href="{url}">Settings</a> page.'
).format(url=url)
#
return message
def after_delete(self, node, user):
self.deauthorize(Auth(user=user), add_log=True)
self.save()
class AddonOAuthUserSettingsBase(AddonUserSettingsBase):
_meta = {
'abstract': True,
}
# Keeps track of what nodes have been given permission to use external
# accounts belonging to the user.
oauth_grants = fields.DictionaryField()
# example:
# {
# '<Node._id>': {
# '<ExternalAccount._id>': {
# <metadata>
# },
# }
# }
#
# metadata here is the specific to each addon.
# The existence of this property is used to determine whether or not
# an addon instance is an "OAuth addon" in
# AddonModelMixin.get_oauth_addons().
oauth_provider = None
serializer = serializer.OAuthAddonSerializer
@property
def has_auth(self):
return bool(self.external_accounts)
@property
def external_accounts(self):
"""The user's list of ``ExternalAccount`` instances for this provider"""
return [
x for x in self.owner.external_accounts
if x.provider == self.oauth_provider.short_name
]
def delete(self, save=True):
for account in self.external_accounts:
self.revoke_oauth_access(account, save=False)
super(AddonOAuthUserSettingsBase, self).delete(save=save)
def grant_oauth_access(self, node, external_account, metadata=None):
"""Give a node permission to use an ``ExternalAccount`` instance."""
# ensure the user owns the external_account
if external_account not in self.owner.external_accounts:
raise PermissionsError()
metadata = metadata or {}
# create an entry for the node, if necessary
if node._id not in self.oauth_grants:
self.oauth_grants[node._id] = {}
# create an entry for the external account on the node, if necessary
if external_account._id not in self.oauth_grants[node._id]:
self.oauth_grants[node._id][external_account._id] = {}
# update the metadata with the supplied values
for key, value in metadata.iteritems():
self.oauth_grants[node._id][external_account._id][key] = value
self.save()
@must_be_logged_in
def revoke_oauth_access(self, external_account, auth, save=True):
"""Revoke all access to an ``ExternalAccount``.
TODO: This should accept node and metadata params in the future, to
allow fine-grained revocation of grants. That's not yet been needed,
so it's not yet been implemented.
"""
for node in self.get_nodes_with_oauth_grants(external_account):
try:
addon_settings = node.get_addon(external_account.provider, deleted=True)
except AttributeError:
# No associated addon settings despite oauth grant
pass
else:
addon_settings.deauthorize(auth=auth)
if User.find(Q('external_accounts', 'eq', external_account._id)).count() == 1:
# Only this user is using the account, so revoke remote access as well.
self.revoke_remote_oauth_access(external_account)
for key in self.oauth_grants:
self.oauth_grants[key].pop(external_account._id, None)
if save:
self.save()
def revoke_remote_oauth_access(self, external_account):
""" Makes outgoing request to remove the remote oauth grant
stored by third-party provider.
Individual addons must override this method, as it is addon-specific behavior.
Not all addon providers support this through their API, but those that do
should also handle the case where this is called with an external_account
with invalid credentials, to prevent a user from being unable to disconnect
an account.
"""
pass
def verify_oauth_access(self, node, external_account, metadata=None):
"""Verify that access has been previously granted.
If metadata is not provided, this checks only if the node can access the
account. This is suitable to check to see if the node's addon settings
is still connected to an external account (i.e., the user hasn't revoked
it in their user settings pane).
If metadata is provided, this checks to see that all key/value pairs
have been granted. This is suitable for checking access to a particular
folder or other resource on an external provider.
"""
metadata = metadata or {}
# ensure the grant exists
try:
grants = self.oauth_grants[node._id][external_account._id]
except KeyError:
return False
# Verify every key/value pair is in the grants dict
for key, value in metadata.iteritems():
if key not in grants or grants[key] != value:
return False
return True
def get_nodes_with_oauth_grants(self, external_account):
# Generator of nodes which have grants for this external account
for node_id, grants in self.oauth_grants.iteritems():
node = Node.load(node_id)
if external_account._id in grants.keys() and not node.is_deleted:
yield node
def get_attached_nodes(self, external_account):
for node in self.get_nodes_with_oauth_grants(external_account):
if node is None:
continue
node_settings = node.get_addon(self.oauth_provider.short_name)
if node_settings is None:
continue
if node_settings.external_account == external_account:
yield node
def merge(self, user_settings):
"""Merge `user_settings` into this instance"""
if user_settings.__class__ is not self.__class__:
raise TypeError('Cannot merge different addons')
for node_id, data in user_settings.oauth_grants.iteritems():
if node_id not in self.oauth_grants:
self.oauth_grants[node_id] = data
else:
node_grants = user_settings.oauth_grants[node_id].iteritems()
for ext_acct, meta in node_grants:
if ext_acct not in self.oauth_grants[node_id]:
self.oauth_grants[node_id][ext_acct] = meta
else:
for k, v in meta:
if k not in self.oauth_grants[node_id][ext_acct]:
self.oauth_grants[node_id][ext_acct][k] = v
user_settings.oauth_grants = {}
user_settings.save()
try:
config = settings.ADDONS_AVAILABLE_DICT[
self.oauth_provider.short_name
]
Model = config.settings_models['node']
except KeyError:
pass
else:
connected = Model.find(Q('user_settings', 'eq', user_settings))
for node_settings in connected:
node_settings.user_settings = self
node_settings.save()
self.save()
def to_json(self, user):
ret = super(AddonOAuthUserSettingsBase, self).to_json(user)
ret['accounts'] = self.serializer(
user_settings=self
).serialized_accounts
return ret
#############
# Callbacks #
#############
def on_delete(self):
"""When the user deactivates the addon, clear auth for connected nodes.
"""
super(AddonOAuthUserSettingsBase, self).on_delete()
nodes = [Node.load(node_id) for node_id in self.oauth_grants.keys()]
for node in nodes:
node_addon = node.get_addon(self.oauth_provider.short_name)
if node_addon and node_addon.user_settings == self:
node_addon.clear_auth()
class SpamMixin(StoredObject):
"""Mixin to add to objects that can be marked as spam.
"""
_meta = {'abstract': True}
# # Node fields that trigger an update to search on save
# SPAM_UPDATE_FIELDS = {
# 'spam_status',
# }
spam_status = fields.IntegerField(default=SpamStatus.UNKNOWN, index=True)
spam_pro_tip = fields.StringField(default=None)
# Data representing the original spam indication
# - author: author name
# - author_email: email of the author
# - content: data flagged
# - headers: request headers
# - Remote-Addr: ip address from request
# - User-Agent: user agent from request
# - Referer: referrer header from request (typo +1, rtd)
spam_data = fields.DictionaryField(default=dict)
date_last_reported = fields.DateTimeField(default=None, index=True)
# Reports is a dict of reports keyed on reporting user
# Each report is a dictionary including:
# - date: date reported
# - retracted: if a report has been retracted
# - category: What type of spam does the reporter believe this is
# - text: Comment on the comment
reports = fields.DictionaryField(default=dict, validate=_validate_reports)
def flag_spam(self):
# If ham and unedited then tell user that they should read it again
if self.spam_status == SpamStatus.UNKNOWN:
self.spam_status = SpamStatus.FLAGGED
def remove_flag(self, save=False):
if self.spam_status != SpamStatus.FLAGGED:
return
for report in self.reports.values():
if not report.get('retracted', True):
return
self.spam_status = SpamStatus.UNKNOWN
if save:
self.save()
@property
def is_spam(self):
return self.spam_status == SpamStatus.SPAM
@property
def is_spammy(self):
return self.spam_status in [SpamStatus.FLAGGED, SpamStatus.SPAM]
def report_abuse(self, user, save=False, **kwargs):
"""Report object is spam or other abuse of OSF
:param user: User submitting report
:param save: Save changes
:param kwargs: Should include category and message
:raises ValueError: if user is reporting self
"""
if user == self.user:
raise ValueError('User cannot report self.')
self.flag_spam()
date = datetime.utcnow()
report = {'date': date, 'retracted': False}
report.update(kwargs)
if 'text' not in report:
report['text'] = None
self.reports[user._id] = report
self.date_last_reported = report['date']
if save:
self.save()
def retract_report(self, user, save=False):
"""Retract last report by user
Only marks the last report as retracted because there could be
history in how the object is edited that requires a user
to flag or retract even if object is marked as HAM.
:param user: User retracting
:param save: Save changes
"""
if user._id in self.reports:
if not self.reports[user._id]['retracted']:
self.reports[user._id]['retracted'] = True
self.remove_flag()
else:
raise ValueError('User has not reported this content')
if save:
self.save()
def confirm_ham(self, save=False):
# not all mixins will implement check spam pre-req, only submit ham when it was incorrectly flagged
if settings.SPAM_CHECK_ENABLED and self.spam_data and self.spam_status in [
SpamStatus.FLAGGED, SpamStatus.SPAM
]:
client = _get_client()
client.submit_ham(
user_ip=self.spam_data['headers']['Remote-Addr'],
user_agent=self.spam_data['headers'].get('User-Agent'),
referrer=self.spam_data['headers'].get('Referer'),
comment_content=self.spam_data['content'],
comment_author=self.spam_data['author'],
comment_author_email=self.spam_data['author_email'],
)
logger.info('confirm_ham update sent')
self.spam_status = SpamStatus.HAM
if save:
self.save()
def confirm_spam(self, save=False):
# not all mixins will implement check spam pre-req, only submit spam when it was incorrectly flagged
if settings.SPAM_CHECK_ENABLED and self.spam_data and self.spam_status in [
SpamStatus.UNKNOWN, SpamStatus.HAM
]:
client = _get_client()
client.submit_spam(
user_ip=self.spam_data['headers']['Remote-Addr'],
user_agent=self.spam_data['headers'].get('User-Agent'),
referrer=self.spam_data['headers'].get('Referer'),
comment_content=self.spam_data['content'],
comment_author=self.spam_data['author'],
comment_author_email=self.spam_data['author_email'],
)
logger.info('confirm_spam update sent')
self.spam_status = SpamStatus.SPAM
if save:
self.save()
@abc.abstractmethod
def check_spam(self, saved_fields, request_headers, save=False):
"""Must return is_spam"""
pass
def do_check_spam(self, author, author_email, content, request_headers):
if self.spam_status == SpamStatus.HAM:
return False
if self.is_spammy:
return True
client = _get_client()
remote_addr = request_headers['Remote-Addr']
user_agent = request_headers.get('User-Agent')
referer = request_headers.get('Referer')
is_spam, pro_tip = client.check_comment(
user_ip=remote_addr,
user_agent=user_agent,
referrer=referer,
comment_content=content,
comment_author=author,
comment_author_email=author_email)
self.spam_pro_tip = pro_tip
self.spam_data['headers'] = {
'Remote-Addr': remote_addr,
'User-Agent': user_agent,
'Referer': referer,
}
self.spam_data['content'] = content
self.spam_data['author'] = author
self.spam_data['author_email'] = author_email
if is_spam:
self.flag_spam()
return is_spam
class SpamMixin(StoredObject):
"""Mixin to add to objects that can be marked as spam.
"""
_meta = {'abstract': True}
UNKNOWN = 0
FLAGGED = 1
SPAM = 2
HAM = 4
spam_status = fields.IntegerField(default=UNKNOWN, index=True)
# Reports is a dict of reports keyed on reporting user
# Each report is a dictionary including:
# - date: date reported
# - retracted: if a report has been retracted
# - category: What type of spam does the reporter believe this is
# - text: Comment on the comment
reports = fields.DictionaryField(default=dict, validate=validate_reports)
def flag_spam(self, save=False):
# If ham and unedited then tell user that they should read it again
if self.spam_status == self.UNKNOWN:
self.spam_status = self.FLAGGED
if save:
self.save()
def remove_flag(self, save=False):
if self.spam_status != self.FLAGGED:
return
for report in self.reports.values():
if not report.get('retracted', True):
return
self.spam_status = self.UNKNOWN
if save:
self.save()
def confirm_ham(self, save=False):
self.spam_status = self.HAM
if save:
self.save()
def confirm_spam(self, save=False):
self.spam_status = self.SPAM
if save:
self.save()
@property
def is_spam(self):
return self.spam_status == self.SPAM
def report_abuse(self, user, save=False, **kwargs):
"""Report object is spam or other abuse of OSF
:param user: User submitting report
:param date: Date report submitted
:param save: Save changes
:param kwargs: Should include category and message
:raises ValueError: if user is reporting self
"""
if user == self.user:
raise ValueError('User cannot report self.')
self.flag_spam()
report = {'date': datetime.utcnow(), 'retracted': False}
report.update(kwargs)
if 'text' not in report:
report['text'] = None
self.reports[user._id] = report
if save:
self.save()
def retract_report(self, user, save=False):
"""Retract last report by user
Only marks the last report as retracted because there could be
history in how the object is edited that requires a user
to flag or retract even if object is marked as HAM.
:param user: User retracting
:param save: Save changes
"""
if user._id in self.reports:
if not self.reports[user._id]['retracted']:
self.reports[user._id]['retracted'] = True
self.remove_flag()
else:
raise ValueError('User has not reported this content')
if save:
self.save()
class StoredFileNode(StoredObject):
"""The storage backend for FileNode objects.
This class should generally not be used or created manually as FileNode
contains all the helpers required.
A FileNode wraps a StoredFileNode to provider usable abstraction layer
"""
__indices__ = [{
'unique':
False,
'key_or_list': [('path', pymongo.ASCENDING),
('node', pymongo.ASCENDING),
('is_file', pymongo.ASCENDING),
('provider', pymongo.ASCENDING)]
}, {
'unique':
False,
'key_or_list': [('node', pymongo.ASCENDING),
('is_file', pymongo.ASCENDING),
('provider', pymongo.ASCENDING)]
}]
_id = fields.StringField(primary=True,
default=lambda: str(bson.ObjectId()))
# The last time the touch method was called on this FileNode
last_touched = fields.DateTimeField()
# A list of dictionaries sorted by the 'modified' key
# The raw output of the metadata request deduped by etag
# Add regardless it can be pinned to a version or not
history = fields.DictionaryField(list=True)
# A concrete version of a FileNode, must have an identifier
versions = fields.ForeignField('FileVersion', list=True)
node = fields.ForeignField('Node', required=True)
parent = fields.ForeignField('StoredFileNode', default=None)
is_file = fields.BooleanField(default=True)
provider = fields.StringField(required=True)
name = fields.StringField(required=True)
path = fields.StringField(required=True)
materialized_path = fields.StringField(required=True)
# The User that has this file "checked out"
# Should only be used for OsfStorage
checkout = fields.AbstractForeignField('User')
#Tags for a file, currently only used for osfStorage
tags = fields.ForeignField('Tag', list=True)
# For Django compatibility
@property
def pk(self):
return self._id
# For Django compatibility
# TODO Find a better way
@property
def node_id(self):
return self.node._id
@property
def deep_url(self):
return self.wrapped().deep_url
def wrapped(self):
"""Wrap self in a FileNode subclass
"""
return FileNode.resolve_class(self.provider, int(self.is_file))(self)
def get_guid(self, create=False):
"""Attempt to find a Guid that points to this object.
One will be created if requested.
:rtype: Guid
"""
try:
# Note sometimes multiple GUIDs can exist for
# a single object. Just go with the first one
return Guid.find(Q('referent', 'eq', self))[0]
except IndexError:
if not create:
return None
return Guid.generate(self)
class User(GuidStoredObject, AddonModelMixin):
# Node fields that trigger an update to the search engine on save
SEARCH_UPDATE_FIELDS = {
'fullname',
'given_name',
'middle_names',
'family_name',
'suffix',
'merged_by',
'date_disabled',
'date_confirmed',
'jobs',
'schools',
'social',
}
# TODO: Add SEARCH_UPDATE_NODE_FIELDS, for fields that should trigger a
# search update for all nodes to which the user is a contributor.
SOCIAL_FIELDS = {
'orcid': u'http://orcid.com/{}',
'github': u'http://github.com/{}',
'scholar': u'http://scholar.google.com/citation?user={}',
'twitter': u'http://twitter.com/{}',
'personal': u'{}',
'linkedIn': u'https://www.linkedin.com/profile/view?id={}',
'impactStory': u'https://impactstory.org/{}',
'researcherId': u'http://researcherid.com/rid/{}',
}
# This is a GuidStoredObject, so this will be a GUID.
_id = fields.StringField(primary=True)
# The primary email address for the account.
# This value is unique, but multiple "None" records exist for:
# * unregistered contributors where an email address was not provided.
# TODO: Update mailchimp subscription on username change in user.save()
username = fields.StringField(required=False, unique=True, index=True)
# Hashed. Use `User.set_password` and `User.check_password`
password = fields.StringField()
fullname = fields.StringField(required=True, validate=string_required)
# user has taken action to register the account
is_registered = fields.BooleanField(index=True)
# user has claimed the account
# TODO: This should be retired - it always reflects is_registered.
# While a few entries exist where this is not the case, they appear to be
# the result of a bug, as they were all created over a small time span.
is_claimed = fields.BooleanField(default=False, index=True)
# a list of strings - for internal use
system_tags = fields.StringField(list=True)
# security emails that have been sent
# TODO: This should be removed and/or merged with system_tags
security_messages = fields.DictionaryField()
# Format: {
# <message label>: <datetime>
# ...
# }
# user was invited (as opposed to registered unprompted)
is_invited = fields.BooleanField(default=False, index=True)
# Per-project unclaimed user data:
# TODO: add validation
unclaimed_records = fields.DictionaryField(required=False)
# Format: {
# <project_id>: {
# 'name': <name that referrer provided>,
# 'referrer_id': <user ID of referrer>,
# 'token': <token used for verification urls>,
# 'email': <email the referrer provided or None>,
# 'claimer_email': <email the claimer entered or None>,
# 'last_sent': <timestamp of last email sent to referrer or None>
# }
# ...
# }
# Time of last sent notification email to newly added contributors
# Format : {
# <project_id>: {
# 'last_sent': time.time()
# }
# ...
# }
contributor_added_email_records = fields.DictionaryField(default=dict)
# The user into which this account was merged
merged_by = fields.ForeignField('user',
default=None,
backref='merged',
index=True)
# verification key used for resetting password
verification_key = fields.StringField()
# confirmed emails
# emails should be stripped of whitespace and lower-cased before appending
# TODO: Add validator to ensure an email address only exists once across
# all User's email lists
emails = fields.StringField(list=True)
# email verification tokens
# see also ``unconfirmed_emails``
email_verifications = fields.DictionaryField(default=dict)
# Format: {
# <token> : {'email': <email address>,
# 'expiration': <datetime>}
# }
# email lists to which the user has chosen a subscription setting
mailing_lists = fields.DictionaryField()
# Format: {
# 'list1': True,
# 'list2: False,
# ...
# }
# the date this user was registered
# TODO: consider removal - this can be derived from date_registered
date_registered = fields.DateTimeField(auto_now_add=dt.datetime.utcnow,
index=True)
# watched nodes are stored via a list of WatchConfigs
watched = fields.ForeignField("WatchConfig", list=True, backref="watched")
# list of users recently added to nodes as a contributor
recently_added = fields.ForeignField("user",
list=True,
backref="recently_added")
# Attached external accounts (OAuth)
external_accounts = fields.ForeignField("externalaccount",
list=True,
backref="connected")
# CSL names
given_name = fields.StringField()
middle_names = fields.StringField()
family_name = fields.StringField()
suffix = fields.StringField()
# Employment history
jobs = fields.DictionaryField(list=True, validate=validate_history_item)
# Format: {
# 'title': <position or job title>,
# 'institution': <institution or organization>,
# 'department': <department>,
# 'location': <location>,
# 'startMonth': <start month>,
# 'startYear': <start year>,
# 'endMonth': <end month>,
# 'endYear': <end year>,
# 'ongoing: <boolean>
# }
# Educational history
schools = fields.DictionaryField(list=True, validate=validate_history_item)
# Format: {
# 'degree': <position or job title>,
# 'institution': <institution or organization>,
# 'department': <department>,
# 'location': <location>,
# 'startMonth': <start month>,
# 'startYear': <start year>,
# 'endMonth': <end month>,
# 'endYear': <end year>,
# 'ongoing: <boolean>
# }
# Social links
social = fields.DictionaryField(validate=validate_social)
# Format: {
# 'personal': <personal site>,
# 'twitter': <twitter id>,
# }
# hashed password used to authenticate to Piwik
piwik_token = fields.StringField()
# date the user last logged in via the web interface
date_last_login = fields.DateTimeField()
# date the user first successfully confirmed an email address
date_confirmed = fields.DateTimeField(index=True)
# When the user was disabled.
date_disabled = fields.DateTimeField(index=True)
# when comments for a node were last viewed
comments_viewed_timestamp = fields.DictionaryField()
# Format: {
# 'node_id': 'timestamp'
# }
# timezone for user's locale (e.g. 'America/New_York')
timezone = fields.StringField(default='Etc/UTC')
# user language and locale data (e.g. 'en_US')
locale = fields.StringField(default='en_US')
_meta = {'optimistic': True}
def __repr__(self):
return '<User({0!r}) with id {1!r}>'.format(self.username, self._id)
def __str__(self):
return self.fullname.encode('ascii', 'replace')
__unicode__ = __str__
# For compatibility with Django auth
@property
def pk(self):
return self._id
@property
def email(self):
return self.username
def is_authenticated(self): # Needed for django compat
return True
def is_anonymous(self):
return False
@property
def absolute_api_v2_url(self):
from api.base.utils import absolute_reverse # Avoid circular dependency
return absolute_reverse('users:user-detail',
kwargs={'user_id': self.pk})
# used by django and DRF
def get_absolute_url(self):
return self.absolute_api_v2_url
@classmethod
def create_unregistered(cls, fullname, email=None):
"""Create a new unregistered user.
"""
user = cls(
username=email,
fullname=fullname,
is_invited=True,
is_registered=False,
)
user.update_guessed_names()
return user
@classmethod
def create(cls, username, password, fullname):
user = cls(
username=username,
fullname=fullname,
)
user.update_guessed_names()
user.set_password(password)
return user
@classmethod
def create_unconfirmed(cls, username, password, fullname, do_confirm=True):
"""Create a new user who has begun registration but needs to verify
their primary email address (username).
"""
user = cls.create(username, password, fullname)
user.add_unconfirmed_email(username)
user.is_registered = False
return user
@classmethod
def create_confirmed(cls, username, password, fullname):
user = cls.create(username, password, fullname)
user.is_registered = True
user.is_claimed = True
user.date_confirmed = user.date_registered
return user
@classmethod
def from_cookie(cls, cookie, secret=None):
"""Attempt to load a user from their signed cookie
:returns: None if a user cannot be loaded else User
"""
if not cookie:
return None
secret = secret or settings.SECRET_KEY
try:
token = itsdangerous.Signer(secret).unsign(cookie)
except itsdangerous.BadSignature:
return None
user_session = Session.load(token)
if user_session is None:
return None
return cls.load(user_session.data.get('auth_user_id'))
def get_or_create_cookie(self, secret=None):
"""Find the cookie for the given user
Create a new session if no cookie is found
:param str secret: The key to sign the cookie with
:returns: The signed cookie
"""
secret = secret or settings.SECRET_KEY
sessions = Session.find(Q('data.auth_user_id', 'eq',
self._id)).sort('-date_modified').limit(1)
if sessions.count() > 0:
user_session = sessions[0]
else:
user_session = Session(
data={
'auth_user_id': self._id,
'auth_user_username': self.username,
'auth_user_fullname': self.fullname,
})
user_session.save()
signer = itsdangerous.Signer(secret)
return signer.sign(user_session._id)
def update_guessed_names(self):
"""Updates the CSL name fields inferred from the the full name.
"""
parsed = utils.impute_names(self.fullname)
self.given_name = parsed['given']
self.middle_names = parsed['middle']
self.family_name = parsed['family']
self.suffix = parsed['suffix']
def register(self, username, password=None):
"""Registers the user.
"""
self.username = username
if password:
self.set_password(password)
if username not in self.emails:
self.emails.append(username)
self.is_registered = True
self.is_claimed = True
self.date_confirmed = dt.datetime.utcnow()
self.update_search()
self.update_search_nodes()
# Emit signal that a user has confirmed
signals.user_confirmed.send(self)
return self
def add_unclaimed_record(self, node, referrer, given_name, email=None):
"""Add a new project entry in the unclaimed records dictionary.
:param Node node: Node this unclaimed user was added to.
:param User referrer: User who referred this user.
:param str given_name: The full name that the referrer gave for this user.
:param str email: The given email address.
:returns: The added record
"""
if not node.can_edit(user=referrer):
raise PermissionsError(
'Referrer does not have permission to add a contributor '
'to project {0}'.format(node._primary_key))
project_id = node._primary_key
referrer_id = referrer._primary_key
if email:
clean_email = email.lower().strip()
else:
clean_email = None
record = {
'name': given_name,
'referrer_id': referrer_id,
'token': generate_confirm_token(),
'email': clean_email
}
self.unclaimed_records[project_id] = record
return record
def display_full_name(self, node=None):
"""Return the full name , as it would display in a contributor list for a
given node.
NOTE: Unclaimed users may have a different name for different nodes.
"""
if node:
unclaimed_data = self.unclaimed_records.get(
node._primary_key, None)
if unclaimed_data:
return unclaimed_data['name']
return self.fullname
@property
def is_active(self):
"""Returns True if the user is active. The user must have activated
their account, must not be deleted, suspended, etc.
:return: bool
"""
return (self.is_registered and self.password is not None
and not self.is_merged and not self.is_disabled
and self.is_confirmed)
def get_unclaimed_record(self, project_id):
"""Get an unclaimed record for a given project_id.
:raises: ValueError if there is no record for the given project.
"""
try:
return self.unclaimed_records[project_id]
except KeyError: # reraise as ValueError
raise ValueError(
'No unclaimed record for user {self._id} on node {project_id}'.
format(**locals()))
def get_claim_url(self, project_id, external=False):
"""Return the URL that an unclaimed user should use to claim their
account. Return ``None`` if there is no unclaimed_record for the given
project ID.
:param project_id: The project ID for the unclaimed record
:raises: ValueError if a record doesn't exist for the given project ID
:rtype: dict
:returns: The unclaimed record for the project
"""
uid = self._primary_key
base_url = settings.DOMAIN if external else '/'
unclaimed_record = self.get_unclaimed_record(project_id)
token = unclaimed_record['token']
return '{base_url}user/{uid}/{project_id}/claim/?token={token}'\
.format(**locals())
def set_password(self, raw_password):
"""Set the password for this user to the hash of ``raw_password``."""
self.password = generate_password_hash(raw_password)
def check_password(self, raw_password):
"""Return a boolean of whether ``raw_password`` was correct."""
if not self.password or not raw_password:
return False
return check_password_hash(self.password, raw_password)
@property
def csl_given_name(self):
parts = [self.given_name]
if self.middle_names:
parts.extend(each[0]
for each in re.split(r'\s+', self.middle_names))
return ' '.join(parts)
@property
def csl_name(self):
return {
'family': self.family_name,
'given': self.csl_given_name,
}
# TODO: This should not be on the User object.
def change_password(self, raw_old_password, raw_new_password,
raw_confirm_password):
"""Change the password for this user to the hash of ``raw_new_password``."""
raw_old_password = (raw_old_password or '').strip()
raw_new_password = (raw_new_password or '').strip()
raw_confirm_password = (raw_confirm_password or '').strip()
issues = []
if not self.check_password(raw_old_password):
issues.append('Old password is invalid')
elif raw_old_password == raw_new_password:
issues.append('Password cannot be the same')
if not raw_old_password or not raw_new_password or not raw_confirm_password:
issues.append('Passwords cannot be blank')
elif len(raw_new_password) < 6:
issues.append('Password should be at least six characters')
elif len(raw_new_password) > 256:
issues.append('Password should not be longer than 256 characters')
if raw_new_password != raw_confirm_password:
issues.append('Password does not match the confirmation')
if issues:
raise ChangePasswordError(issues)
self.set_password(raw_new_password)
def _set_email_token_expiration(self, token, expiration=None):
"""Set the expiration date for given email token.
:param str token: The email token to set the expiration for.
:param datetime expiration: Datetime at which to expire the token. If ``None``, the
token will expire after ``settings.EMAIL_TOKEN_EXPIRATION`` hours. This is only
used for testing purposes.
"""
expiration = expiration or (dt.datetime.utcnow() + dt.timedelta(
hours=settings.EMAIL_TOKEN_EXPIRATION))
self.email_verifications[token]['expiration'] = expiration
return expiration
def add_unconfirmed_email(self, email, expiration=None):
"""Add an email verification token for a given email."""
# TODO: This is technically not compliant with RFC 822, which requires
# that case be preserved in the "local-part" of an address. From
# a practical standpoint, the vast majority of email servers do
# not preserve case.
# ref: https://tools.ietf.org/html/rfc822#section-6
email = email.lower().strip()
if email in self.emails:
raise ValueError("Email already confirmed to this user.")
utils.validate_email(email)
# If the unconfirmed email is already present, refresh the token
if email in self.unconfirmed_emails:
self.remove_unconfirmed_email(email)
token = generate_confirm_token()
# handle when email_verifications is None
if not self.email_verifications:
self.email_verifications = {}
self.email_verifications[token] = {'email': email}
self._set_email_token_expiration(token, expiration=expiration)
return token
def remove_unconfirmed_email(self, email):
"""Remove an unconfirmed email addresses and their tokens."""
for token, value in self.email_verifications.iteritems():
if value.get('email') == email:
del self.email_verifications[token]
return True
return False
def remove_email(self, email):
"""Remove a confirmed email"""
if email == self.username:
raise PermissionsError("Can't remove primary email")
if email in self.emails:
self.emails.remove(email)
signals.user_email_removed.send(self, email=email)
@signals.user_email_removed.connect
def _send_email_removal_confirmations(self, email):
mails.send_mail(
to_addr=self.username,
mail=mails.REMOVED_EMAIL,
user=self,
removed_email=email,
security_addr='alternate email address ({})'.format(email))
mails.send_mail(to_addr=email,
mail=mails.REMOVED_EMAIL,
user=self,
removed_email=email,
security_addr='primary email address ({})'.format(
self.username))
def get_confirmation_token(self, email, force=False):
"""Return the confirmation token for a given email.
:param str email: Email to get the token for.
:param bool force: If an expired token exists for the given email, generate a new
token and return that token.
:raises: ExpiredTokenError if trying to access a token that is expired and force=False.
:raises: KeyError if there no token for the email.
"""
# TODO: Refactor "force" flag into User.get_or_add_confirmation_token
for token, info in self.email_verifications.items():
if info['email'].lower() == email.lower():
# Old records will not have an expiration key. If it's missing,
# assume the token is expired
expiration = info.get('expiration')
if not expiration or (expiration
and expiration < dt.datetime.utcnow()):
if not force:
raise ExpiredTokenError(
'Token for email "{0}" is expired'.format(email))
else:
new_token = self.add_unconfirmed_email(email)
self.save()
return new_token
return token
raise KeyError('No confirmation token for email "{0}"'.format(email))
def get_confirmation_url(self, email, external=True, force=False):
"""Return the confirmation url for a given email.
:raises: ExpiredTokenError if trying to access a token that is expired.
:raises: KeyError if there is no token for the email.
"""
base = settings.DOMAIN if external else '/'
token = self.get_confirmation_token(email, force=force)
return "{0}confirm/{1}/{2}/".format(base, self._primary_key, token)
def _get_unconfirmed_email_for_token(self, token):
"""Return whether or not a confirmation token is valid for this user.
:rtype: bool
"""
if token not in self.email_verifications:
raise exceptions.InvalidTokenError()
verification = self.email_verifications[token]
# Not all tokens are guaranteed to have expiration dates
if ('expiration' in verification
and verification['expiration'] < dt.datetime.utcnow()):
raise exceptions.ExpiredTokenError()
return verification['email']
def verify_claim_token(self, token, project_id):
"""Return whether or not a claim token is valid for this user for
a given node which they were added as a unregistered contributor for.
"""
try:
record = self.get_unclaimed_record(project_id)
except ValueError: # No unclaimed record for given pid
return False
return record['token'] == token
def confirm_email(self, token, merge=False):
"""Confirm the email address associated with the token"""
email = self._get_unconfirmed_email_for_token(token)
# If this email is confirmed on another account, abort
try:
user_to_merge = User.find_one(Q('emails', 'iexact', email))
except NoResultsFound:
user_to_merge = None
if user_to_merge and merge:
self.merge_user(user_to_merge)
elif user_to_merge:
raise exceptions.MergeConfirmedRequiredError(
'Merge requires confirmation',
user=self,
user_to_merge=user_to_merge,
)
# If another user has this email as its username, get it
try:
unregistered_user = User.find_one(
Q('username', 'eq', email) & Q('_id', 'ne', self._id))
except NoResultsFound:
unregistered_user = None
if unregistered_user:
self.merge_user(unregistered_user)
self.save()
unregistered_user.username = None
if email not in self.emails:
self.emails.append(email)
# Complete registration if primary email
if email.lower() == self.username.lower():
self.register(self.username)
self.date_confirmed = dt.datetime.utcnow()
# Revoke token
del self.email_verifications[token]
# TODO: We can't assume that all unclaimed records are now claimed.
# Clear unclaimed records, so user's name shows up correctly on
# all projects
self.unclaimed_records = {}
self.save()
self.update_search_nodes()
return True
@property
def unconfirmed_emails(self):
# Handle when email_verifications field is None
email_verifications = self.email_verifications or {}
return [each['email'] for each in email_verifications.values()]
def update_search_nodes(self):
"""Call `update_search` on all nodes on which the user is a
contributor. Needed to add self to contributor lists in search upon
registration or claiming.
"""
for node in self.node__contributed:
node.update_search()
def update_search_nodes_contributors(self):
"""
Bulk update contributor name on all nodes on which the user is
a contributor.
:return:
"""
from website.search import search
search.update_contributors(self.visible_contributor_to)
@property
def is_confirmed(self):
return bool(self.date_confirmed)
@property
def social_links(self):
return {
key: self.SOCIAL_FIELDS[key].format(val)
for key, val in self.social.items()
if val and self.SOCIAL_FIELDS.get(key)
}
@property
def biblio_name(self):
given_names = self.given_name + ' ' + self.middle_names
surname = self.family_name
if surname != given_names:
initials = [
name[0].upper() + '.' for name in given_names.split(' ')
if name and re.search(r'\w', name[0], re.I)
]
return u'{0}, {1}'.format(surname, ' '.join(initials))
return surname
@property
def given_name_initial(self):
"""
The user's preferred initialization of their given name.
Some users with common names may choose to distinguish themselves from
their colleagues in this way. For instance, there could be two
well-known researchers in a single field named "Robert Walker".
"Walker, R" could then refer to either of them. "Walker, R.H." could
provide easy disambiguation.
NOTE: The internal representation for this should never end with a
period. "R" and "R.H" would be correct in the prior case, but
"R.H." would not.
"""
return self.given_name[0]
@property
def url(self):
return '/{}/'.format(self._primary_key)
@property
def api_url(self):
return '/api/v1/profile/{0}/'.format(self._primary_key)
@property
def absolute_url(self):
return urlparse.urljoin(settings.DOMAIN, self.url)
@property
def display_absolute_url(self):
url = self.absolute_url
if url is not None:
return re.sub(r'https?:', '', url).strip('/')
@property
def deep_url(self):
return '/profile/{}/'.format(self._primary_key)
@property
def gravatar_url(self):
return filters.gravatar(self,
use_ssl=True,
size=settings.GRAVATAR_SIZE_ADD_CONTRIBUTOR)
def get_activity_points(self, db=None):
db = db or framework.mongo.database
return analytics.get_total_activity_count(self._primary_key, db=db)
@property
def is_disabled(self):
"""Whether or not this account has been disabled.
Abstracts ``User.date_disabled``.
:return: bool
"""
return self.date_disabled is not None
@is_disabled.setter
def is_disabled(self, val):
"""Set whether or not this account has been disabled."""
if val:
self.date_disabled = dt.datetime.utcnow()
else:
self.date_disabled = None
@property
def is_merged(self):
'''Whether or not this account has been merged into another account.
'''
return self.merged_by is not None
@property
def profile_url(self):
return '/{}/'.format(self._id)
@property
def contributor_to(self):
return (node for node in self.node__contributed
if not (node.is_deleted or node.is_dashboard))
@property
def visible_contributor_to(self):
return (node for node in self.contributor_to
if self._id in node.visible_contributor_ids)
def get_summary(self, formatter='long'):
return {
'user_fullname': self.fullname,
'user_profile_url': self.profile_url,
'user_display_name': name_formatters[formatter](self),
'user_is_claimed': self.is_claimed
}
def save(self, *args, **kwargs):
# TODO: Update mailchimp subscription on username change
# Avoid circular import
from framework.analytics import tasks as piwik_tasks
self.username = self.username.lower().strip(
) if self.username else None
ret = super(User, self).save(*args, **kwargs)
if self.SEARCH_UPDATE_FIELDS.intersection(ret) and self.is_confirmed:
self.update_search()
self.update_search_nodes_contributors()
if settings.PIWIK_HOST and not self.piwik_token:
piwik_tasks.update_user(self._id)
return ret
def update_search(self):
from website import search
try:
search.search.update_user(self)
except search.exceptions.SearchUnavailableError as e:
logger.exception(e)
log_exception()
@classmethod
def find_by_email(cls, email):
try:
user = cls.find_one(Q('emails', 'eq', email))
return [user]
except:
return []
def serialize(self, anonymous=False):
return {
'id':
utils.privacy_info_handle(self._primary_key, anonymous),
'fullname':
utils.privacy_info_handle(self.fullname, anonymous, name=True),
'registered':
self.is_registered,
'url':
utils.privacy_info_handle(self.url, anonymous),
'api_url':
utils.privacy_info_handle(self.api_url, anonymous),
}
###### OSF-Specific methods ######
def watch(self, watch_config):
"""Watch a node by adding its WatchConfig to this user's ``watched``
list. Raises ``ValueError`` if the node is already watched.
:param watch_config: The WatchConfig to add.
:param save: Whether to save the user.
"""
watched_nodes = [each.node for each in self.watched]
if watch_config.node in watched_nodes:
raise ValueError('Node is already being watched.')
watch_config.save()
self.watched.append(watch_config)
return None
def unwatch(self, watch_config):
"""Unwatch a node by removing its WatchConfig from this user's ``watched``
list. Raises ``ValueError`` if the node is not already being watched.
:param watch_config: The WatchConfig to remove.
:param save: Whether to save the user.
"""
for each in self.watched:
if watch_config.node._id == each.node._id:
each.__class__.remove_one(each)
return None
raise ValueError('Node not being watched.')
def is_watching(self, node):
'''Return whether a not a user is watching a Node.'''
watched_node_ids = set([config.node._id for config in self.watched])
return node._id in watched_node_ids
def get_recent_log_ids(self, since=None):
'''Return a generator of recent logs' ids.
:param since: A datetime specifying the oldest time to retrieve logs
from. If ``None``, defaults to 60 days before today. Must be a tz-aware
datetime because PyMongo's generation times are tz-aware.
:rtype: generator of log ids (strings)
'''
log_ids = []
# Default since to 60 days before today if since is None
# timezone aware utcnow
utcnow = dt.datetime.utcnow().replace(tzinfo=pytz.utc)
since_date = since or (utcnow - dt.timedelta(days=60))
for config in self.watched:
# Extract the timestamps for each log from the log_id (fast!)
# The first 4 bytes of Mongo's ObjectId encodes time
# This prevents having to load each Log Object and access their
# date fields
node_log_ids = [
log_id for log_id in config.node.logs._to_primary_keys()
if bson.ObjectId(log_id).generation_time > since_date
and log_id not in log_ids
]
# Log ids in reverse chronological order
log_ids = _merge_into_reversed(log_ids, node_log_ids)
return (l_id for l_id in log_ids)
def get_daily_digest_log_ids(self):
'''Return a generator of log ids generated in the past day
(starting at UTC 00:00).
'''
utcnow = dt.datetime.utcnow()
midnight = dt.datetime(utcnow.year,
utcnow.month,
utcnow.day,
0,
0,
0,
tzinfo=pytz.utc)
return self.get_recent_log_ids(since=midnight)
@property
def can_be_merged(self):
"""The ability of the `merge_user` method to fully merge the user"""
return all((addon.can_be_merged for addon in self.get_addons()))
def merge_user(self, user):
"""Merge a registered user into this account. This user will be
a contributor on any project. if the registered user and this account
are both contributors of the same project. Then it will remove the
registered user and set this account to the highest permission of the two
and set this account to be visible if either of the two are visible on
the project.
:param user: A User object to be merged.
"""
# Fail if the other user has conflicts.
if not user.can_be_merged:
raise exceptions.MergeConflictError("Users cannot be merged")
# Move over the other user's attributes
# TODO: confirm
for system_tag in user.system_tags:
if system_tag not in self.system_tags:
self.system_tags.append(system_tag)
self.is_claimed = self.is_claimed or user.is_claimed
self.is_invited = self.is_invited or user.is_invited
# copy over profile only if this user has no profile info
if user.jobs and not self.jobs:
self.jobs = user.jobs
if user.schools and not self.schools:
self.schools = user.schools
if user.social and not self.social:
self.social = user.social
unclaimed = user.unclaimed_records.copy()
unclaimed.update(self.unclaimed_records)
self.unclaimed_records = unclaimed
# - unclaimed records should be connected to only one user
user.unclaimed_records = {}
security_messages = user.security_messages.copy()
security_messages.update(self.security_messages)
self.security_messages = security_messages
for key, value in user.mailing_lists.iteritems():
# subscribe to each list if either user was subscribed
subscription = value or self.mailing_lists.get(key)
signals.user_merged.send(self,
list_name=key,
subscription=subscription)
# clear subscriptions for merged user
signals.user_merged.send(user, list_name=key, subscription=False)
for node_id, timestamp in user.comments_viewed_timestamp.iteritems():
if not self.comments_viewed_timestamp.get(node_id):
self.comments_viewed_timestamp[node_id] = timestamp
elif timestamp > self.comments_viewed_timestamp[node_id]:
self.comments_viewed_timestamp[node_id] = timestamp
self.emails.extend(user.emails)
user.emails = []
for k, v in user.email_verifications.iteritems():
email_to_confirm = v['email']
if k not in self.email_verifications and email_to_confirm != user.username:
self.email_verifications[k] = v
user.email_verifications = {}
# FOREIGN FIELDS
for watched in user.watched:
if watched not in self.watched:
self.watched.append(watched)
user.watched = []
for account in user.external_accounts:
if account not in self.external_accounts:
self.external_accounts.append(account)
user.external_accounts = []
# - addons
# Note: This must occur before the merged user is removed as a
# contributor on the nodes, as an event hook is otherwise fired
# which removes the credentials.
for addon in user.get_addons():
user_settings = self.get_or_add_addon(addon.config.short_name)
user_settings.merge(addon)
user_settings.save()
# - projects where the user was a contributor
for node in user.node__contributed:
# Skip dashboard node
if node.is_dashboard:
continue
# if both accounts are contributor of the same project
if node.is_contributor(self) and node.is_contributor(user):
if node.permissions[user._id] > node.permissions[self._id]:
permissions = node.permissions[user._id]
else:
permissions = node.permissions[self._id]
node.set_permissions(user=self, permissions=permissions)
visible1 = self._id in node.visible_contributor_ids
visible2 = user._id in node.visible_contributor_ids
if visible1 != visible2:
node.set_visible(user=self,
visible=True,
log=True,
auth=Auth(user=self))
else:
node.add_contributor(
contributor=self,
permissions=node.get_permissions(user),
visible=node.get_visible(user),
log=False,
)
try:
node.remove_contributor(
contributor=user,
auth=Auth(user=self),
log=False,
)
except ValueError:
logger.error('Contributor {0} not in list on node {1}'.format(
user._id, node._id))
node.save()
# - projects where the user was the creator
for node in user.node__created:
node.creator = self
node.save()
# finalize the merge
remove_sessions_for_user(user)
# - username is set to None so the resultant user can set it primary
# in the future.
user.username = None
user.password = None
user.verification_key = None
user.merged_by = self
user.save()
def get_projects_in_common(self, other_user, primary_keys=True):
"""Returns either a collection of "shared projects" (projects that both users are contributors for)
or just their primary keys
"""
if primary_keys:
projects_contributed_to = set(
self.node__contributed._to_primary_keys())
return projects_contributed_to.intersection(
other_user.node__contributed._to_primary_keys())
else:
projects_contributed_to = set(self.node__contributed)
return projects_contributed_to.intersection(
other_user.node__contributed)
def n_projects_in_common(self, other_user):
"""Returns number of "shared projects" (projects that both users are contributors for)"""
return len(self.get_projects_in_common(other_user, primary_keys=True))
class MailRecord(StoredObject):
_id = fields.StringField(primary=True, default=lambda: str(bson.ObjectId()))
data = fields.DictionaryField()
records = fields.AbstractForeignField(list=True)
class EmailApprovableSanction(TokenApprovableSanction):
# Tell modularodm not to attach backends
_meta = {
'abstract': True,
}
AUTHORIZER_NOTIFY_EMAIL_TEMPLATE = None
NON_AUTHORIZER_NOTIFY_EMAIL_TEMPLATE = None
VIEW_URL_TEMPLATE = ''
APPROVE_URL_TEMPLATE = ''
REJECT_URL_TEMPLATE = ''
# A flag to conditionally run a callback on complete
notify_initiator_on_complete = fields.BooleanField(default=False)
# Store a persistant copy of urls for use when needed outside of a request context.
# This field gets automagically updated whenever models approval_state is modified
# and the model is saved
# {
# 'abcde': {
# 'approve': [APPROVAL_URL],
# 'reject': [REJECT_URL],
# }
# }
stashed_urls = fields.DictionaryField(default=dict)
@staticmethod
def _format_or_empty(template, context):
if context:
return template.format(**context)
return ''
def _view_url(self, user_id, node):
return self._format_or_empty(self.VIEW_URL_TEMPLATE,
self._view_url_context(user_id, node))
def _view_url_context(self, user_id, node):
return None
def _approval_url(self, user_id):
return self._format_or_empty(self.APPROVE_URL_TEMPLATE,
self._approval_url_context(user_id))
def _approval_url_context(self, user_id):
return None
def _rejection_url(self, user_id):
return self._format_or_empty(self.REJECT_URL_TEMPLATE,
self._rejection_url_context(user_id))
def _rejection_url_context(self, user_id):
return None
def _send_approval_request_email(self, user, template, context):
mails.send_mail(user.username, template, user=user, **context)
def _email_template_context(self, user, node, is_authorizer=False):
return {}
def _notify_authorizer(self, authorizer, node):
context = self._email_template_context(authorizer,
node,
is_authorizer=True)
if self.AUTHORIZER_NOTIFY_EMAIL_TEMPLATE:
self._send_approval_request_email(
authorizer, self.AUTHORIZER_NOTIFY_EMAIL_TEMPLATE, context)
else:
raise NotImplementedError
def _notify_non_authorizer(self, user, node):
context = self._email_template_context(user, node)
if self.NON_AUTHORIZER_NOTIFY_EMAIL_TEMPLATE:
self._send_approval_request_email(
user, self.NON_AUTHORIZER_NOTIFY_EMAIL_TEMPLATE, context)
else:
raise NotImplementedError
def add_authorizer(self, user, node, **kwargs):
super(EmailApprovableSanction,
self).add_authorizer(user, node, **kwargs)
self.stashed_urls[user._id] = {
'view': self._view_url(user._id, node),
'approve': self._approval_url(user._id),
'reject': self._rejection_url(user._id)
}
self.save()
def _notify_initiator(self):
raise NotImplementedError
def _on_complete(self, *args):
if self.notify_initiator_on_complete:
self._notify_initiator()
class Article(StoredObject):
_id = fields.StringField(default=make_oid)
record = fields.DictionaryField()
_lrecord = fields.DictionaryField()
date = fields.DateTimeField(index=True)
pmid = fields.StringField(index=True)
doi = fields.StringField(index=True)
place = fields.StringField()
authors = fields.ForeignField('Author', list=True, backref='wrote')
publisher = fields.StringField()
publisher_url = fields.StringField()
pubmed_html = fields.ForeignField('HTMLDocument', backref='scraped')
publisher_html = fields.ForeignField('HTMLDocument', backref='scraped')
publisher_pdf = fields.ForeignField('PDFDocument', backref='scraped')
verified = fields.StringField(list=True)
tags = fields.DictionaryField('Tag', list=True)
date_last_scraped = fields.DateTimeField(index=True)
date_last_tagged = fields.DateTimeField(index=True)
def __repr__(self):
return '<Article: PMID={0}, DOI={1}>'.format(self.pmid, self.doi)
def _get_doi_openurl(self, save=True):
"""Look up DOI using CrossRef's OpenURL service. Pass enough
information for unambiguous resolution.
:param bool save: Save record if DOI is found
"""
# Check required fields
try:
title = self.record['TI']
aulast = self.authors[0].last
year = self.date.year
except:
raise Exception(
'Article must include title, first author, and year.')
# Note: OpenURL requests tend to get dropped; must set manual timeout,
# else requests may never terminate
data = requests.get(OPENURL_URL,
params={
'atitle': title,
'aulast': aulast,
'year': year,
'noredirect': 'true',
'pid': EMAIL_ADDR,
},
timeout=10)
data_parsed = PyQuery(data.content.replace(' xmlns:',
' xmlnamespace:'))
doi = data_parsed('doi').text()
if doi:
self.doi = doi
if save:
self.save()
def update_date(self):
self.date = parse_publication_date(self.record['DP'])
@classmethod
def from_record(cls, record, doi=None):
"""Create instance of Article from a PubMed record.
:param dict record: PubMed record from pubtools
:param str doi: Optional DOI
:return: Created article
"""
article = Article()
# Store original record
article.record = record
# Add authors
# FAU -> Full Author
for author_name in record.get('FAU', []):
human = HumanName(author_name)
try:
author = Author.find_one(
Q('last', 'eq', human.last) & Q('first', 'eq', human.first)
& Q('middle', 'eq', human.middle)
& Q('suffix', 'eq', human.suffix))
except:
author = Author(
last=human.last,
first=human.first,
middle=human.middle,
suffix=human.suffix,
)
author.save()
article.authors.append(author)
# Add date
article.update_date()
# Add PMID
article.pmid = record['PMID']
# Get DOI from CrossRef
if doi is None:
try:
article._get_doi_openurl(save=False)
except:
pass
article.save()
return article
@classmethod
def from_pmid(cls, pmid):
records = pubtools.download_pmids([pmid])
return cls.from_record(records[0])
@classmethod
def from_doi(cls, doi):
pass
def _get_filepath(self, document_type):
"""Build filepath.
:param str document_type: Document type (html, pdf, pmc)
:return str: Path to file
"""
return os.path.join(
SAVE_DIRS[document_type],
'{}.{}'.format(self.pmid, EXTENSIONS[document_type]))
def _add_document(self, document_type, save=True):
"""Create document field corresponding to stored file.
:param str document_type: Document type (html, pdf, pmc)
:param bool save: Save record after update
"""
filepath = self._get_filepath(document_type)
if not os.path.exists(filepath):
raise ValueError('File does not exist')
document_class = DOCUMENT_MAP[document_type]['class']
document_search = document_class.find(Q('filepath', 'eq', filepath))
if document_search.count():
document = document_search[0]
else:
document = DOCUMENT_MAP[document_type]['class'](
filepath=filepath,
document_type=document_type,
)
document.save()
setattr(self, DOCUMENT_MAP[document_type]['field'], document)
if save:
self.save()
def _remove_document(self, document_type):
"""Remove document field and any existing stored files.
:param str document_type: Document type (html, pdf, pmc)
"""
document_attr = DOCUMENT_MAP[document_type]['field']
document = getattr(self, document_attr)
if document:
setattr(self, document_attr, None)
document.remove_one(document)
if document.filepath and os.path.exists(document.filepath):
os.remove(document.filepath)
if document.extract_filepath and os.path.exists(
document.extract_filepath):
os.remove(document.extract_filepath)
def get_institution(self, save=True):
affiliation = self.record.get('AD')
if affiliation is None:
return
self.place = get_institution(affiliation)
if save:
self.save()
def scrape(self, scraper=None, document_types=None, overwrite=False):
"""Fetch and save documents, then add to document fields.
:param Scrape scraper: Article scraper; created if `None`
:param list document_types: Document types to scrape; may include
'pmc', 'html', and 'pdf'
:param bool overwrite: Overwrite existing files
"""
# Get default arguments
scraper = scraper or SCRAPE_CLASS(**SCRAPE_KWARGS)
document_types = document_types or DOCUMENT_TYPES
# Update scraped date
self.date_last_scraped = datetime.datetime.utcnow()
self.save()
# Skip files if document field and associated file already exist
if not overwrite:
for document_type in document_types:
document = getattr(self, DOCUMENT_MAP[document_type]['field'])
filepath = self._get_filepath(document_type)
if document:
if filepath and os.path.exists(filepath):
# Document is complete; remove from fetch list
document_types.remove(document_type)
else:
# Document field exists, but file is missing; remove
# document and keep in fetch list
self._remove_document(document_type)
else:
if os.path.exists(filepath):
# Document file exists, but field is empty; create
# document field pointing to file
self._add_document(document_type, save=False)
# Delete existing documents fields and files
else:
for document_type in DOCUMENT_TYPES:
self._remove_document(document_type)
# Scrape files
try:
info = scraper.scrape(
pmid=self.pmid,
doi=self.doi,
fetch_types=document_types,
)
except ScrapeError:
logger.info('Could not scrape article')
return
# Save scraped files
saved = info.save(self.pmid, save_dirs=SAVE_DIRS)
# Create document objects and add to self
for document_type in saved:
self._add_document(document_type, save=False)
# Add publisher information
self.publisher = info.publisher
self.publisher_url = info.pub_link
self.save()
def verify(self, threshold=VERIFY_THRESHOLD, overwrite=False, save=True):
"""Verify referenced documents.
:param float threshold: Verification threshold
:param bool overwrite: Overwrite existing verification info
:param bool save: Save record after update
"""
self.verified = [
name for name, field in DOCUMENT_TYPES_TO_FIELDS.iteritems()
if getattr(self, field) is not None
and getattr(self, field).verify(threshold, overwrite=overwrite)
]
if save:
self.save()
def tag(self, tag_groups=None, overwrite=False, save=True):
"""Add tags to article.
:param list tag_groups: List of TagGroup objects
:param bool overwrite: Overwrite existing tags
:param bool save: Save record after update
:return list: New or modified extracted tags
"""
tag_groups = tag_groups or pattern.tag_groups.values()
if overwrite:
self.tags = []
existing_tags = []
else:
existing_tags = [tagger.Tag(tag) for tag in self.tags]
new_tags = []
self.verify(save=False)
for document_type in self.verified:
document_field = DOCUMENT_TYPES_TO_FIELDS[document_type]
document = getattr(self, document_field)
# Quit if document not set
if document is None:
continue
doc = document.read()
# Quit if document empty or fails verification
if not doc:
continue
# Clean document text
doc = clean(doc)
for tag_group in tag_groups:
# Extract tags
tags = tagger.tag(tag_group, doc)
for tag in tags:
# Build context documents
context_data = {document_type: tag['context']}
group_data = {document_type: tag['group']}
span_data = {document_type: tag['span']}
# Update existing tag with context
if tag in existing_tags:
idx = existing_tags.index(tag)
if document_type not in existing_tags[idx]['context']:
existing_tags[idx]['context'].update(context_data)
existing_tags[idx]['group'].update(group_data)
existing_tags[idx]['span'].update(span_data)
new_tags.append(existing_tags[idx])
# Create new tag in database
else:
tag['context'] = context_data
tag['group'] = group_data
tag['span'] = span_data
existing_tags.append(tag)
new_tags.append(tag)
# Cast tags to dictionaries for ODM compatibility
self.tags = [dict(tag) for tag in existing_tags]
# Update tagged date
self.date_last_tagged = datetime.datetime.utcnow()
if save:
self.save()
return new_tags
def clear_tags(self, labels, save=True):
"""Delete all tags matching any of the provided labels.
:param list labels: Labels of tags to delete
:param bool save: Save record after update
"""
self.tags = [tag for tag in self.tags if tag['label'] not in labels]
if save:
self.save()
class AddonGitHubNodeSettings(AddonNodeSettingsBase):
user = fields.StringField()
repo = fields.StringField()
hook_id = fields.StringField()
hook_secret = fields.StringField()
user_settings = fields.ForeignField('addongithubusersettings',
backref='authorized')
registration_data = fields.DictionaryField()
@property
def has_auth(self):
return bool(self.user_settings and self.user_settings.has_auth)
@property
def complete(self):
return self.has_auth and self.repo is not None and self.user is not None
def find_or_create_file_guid(self, path):
return GithubGuidFile.get_or_create(node=self.owner, path=path)
def authorize(self, user_settings, save=False):
self.user_settings = user_settings
self.owner.add_log(
action='github_node_authorized',
params={
'project': self.owner.parent_id,
'node': self.owner._id,
},
auth=Auth(user_settings.owner),
)
if save:
self.save()
def deauthorize(self, auth=None, log=True, save=False):
self.delete_hook(save=False)
self.user, self.repo, self.user_settings = None, None, None
if log:
self.owner.add_log(
action='github_node_deauthorized',
params={
'project': self.owner.parent_id,
'node': self.owner._id,
},
auth=auth,
)
if save:
self.save()
def delete(self, save=False):
super(AddonGitHubNodeSettings, self).delete(save=False)
self.deauthorize(save=False, log=False)
if save:
self.save()
@property
def repo_url(self):
if self.user and self.repo:
return 'https://github.com/{0}/{1}/'.format(self.user, self.repo)
@property
def short_url(self):
if self.user and self.repo:
return '/'.join([self.user, self.repo])
@property
def is_private(self):
connection = GitHub.from_settings(self.user_settings)
return connection.repo(user=self.user, repo=self.repo).private
# TODO: Delete me and replace with serialize_settings / Knockout
def to_json(self, user):
ret = super(AddonGitHubNodeSettings, self).to_json(user)
user_settings = user.get_addon('github')
ret.update({
'user_has_auth': user_settings and user_settings.has_auth,
'is_registration': self.owner.is_registration,
})
if self.user_settings and self.user_settings.has_auth:
valid_credentials = False
owner = self.user_settings.owner
if user_settings and user_settings.owner == owner:
connection = GitHub.from_settings(user_settings)
# TODO: Fetch repo list client-side
# Since /user/repos excludes organization repos to which the
# current user has push access, we have to make extra requests to
# find them
valid_credentials = True
try:
repos = itertools.chain.from_iterable(
(connection.repos(), connection.my_org_repos()))
repo_names = [
'{0} / {1}'.format(repo.owner.login, repo.name)
for repo in repos
]
except GitHubError as error:
if error.code == http.UNAUTHORIZED:
repo_names = []
valid_credentials = False
ret.update({'repo_names': repo_names})
ret.update({
'node_has_auth':
True,
'github_user':
self.user or '',
'github_repo':
self.repo or '',
'github_repo_full_name':
'{0} / {1}'.format(self.user, self.repo),
'auth_osf_name':
owner.fullname,
'auth_osf_url':
owner.url,
'auth_osf_id':
owner._id,
'github_user_name':
self.user_settings.github_user_name,
'github_user_url':
'https://github.com/{0}'.format(
self.user_settings.github_user_name),
'is_owner':
owner == user,
'valid_credentials':
valid_credentials,
'addons_url':
web_url_for('user_addons'),
})
return ret
def serialize_waterbutler_credentials(self):
if not self.complete or not self.repo:
raise exceptions.AddonError('Addon is not authorized')
return {'token': self.user_settings.oauth_access_token}
def serialize_waterbutler_settings(self):
if not self.complete:
raise exceptions.AddonError('Repo is not configured')
return {
'owner': self.user,
'repo': self.repo,
}
def create_waterbutler_log(self, auth, action, metadata):
path = metadata['path']
url = self.owner.web_url_for('addon_view_or_download_file',
path=path,
provider='github')
if not metadata.get('extra'):
sha = None
urls = {}
else:
sha = metadata['extra']['commit']['sha']
urls = {
'view': '{0}?ref={1}'.format(url, sha),
'download': '{0}?action=download&ref={1}'.format(url, sha)
}
self.owner.add_log(
'github_{0}'.format(action),
auth=auth,
params={
'project': self.owner.parent_id,
'node': self.owner._id,
'path': path,
'urls': urls,
'github': {
'user': self.user,
'repo': self.repo,
'sha': sha,
},
},
)
#############
# Callbacks #
#############
def before_page_load(self, node, user):
"""
:param Node node:
:param User user:
:return str: Alert message
"""
messages = []
# Quit if not contributor
if not node.is_contributor(user):
return messages
# Quit if not configured
if self.user is None or self.repo is None:
return messages
# Quit if no user authorization
if self.user_settings is None:
return messages
connect = GitHub.from_settings(self.user_settings)
try:
repo = connect.repo(self.user, self.repo)
except (ApiError, GitHubError):
return
node_permissions = 'public' if node.is_public else 'private'
repo_permissions = 'private' if repo.private else 'public'
if repo_permissions != node_permissions:
message = (
'Warnings: This OSF {category} is {node_perm}, but the GitHub '
'repo {user} / {repo} is {repo_perm}.'.format(
category=node.project_or_component,
node_perm=node_permissions,
repo_perm=repo_permissions,
user=self.user,
repo=self.repo,
))
if repo_permissions == 'private':
message += (
' Users can view the contents of this private GitHub '
'repository through this public project.')
else:
message += (
' The files in this GitHub repo can be viewed on GitHub '
'<a href="https://github.com/{user}/{repo}/">here</a>.'
).format(
user=self.user,
repo=self.repo,
)
messages.append(message)
return messages
# TODO: Rename to before_remove_contributor_message
def before_remove_contributor(self, node, removed):
"""
:param Node node:
:param User removed:
:return str: Alert message
"""
if self.user_settings and self.user_settings.owner == removed:
return (
'The GitHub add-on for this {category} is authenticated '
'by {user}. Removing this user will also remove write access '
'to GitHub unless another contributor re-authenticates. You '
'can download the contents of this repository before removing '
'this contributor <a href="{url}">here</a>.').format(
category=node.project_or_component,
user=removed.fullname,
url=node.api_url + 'github/tarball/')
def after_remove_contributor(self, node, removed, auth=None):
"""
:param Node node:
:param User removed:
:return str: Alert message
"""
if self.user_settings and self.user_settings.owner == removed:
# Delete OAuth tokens
self.user_settings = None
self.save()
message = (
u'Because the GitHub add-on for {category} "{title}" was authenticated '
u'by {user}, authentication information has been deleted.'
).format(category=node.category_display,
title=node.title,
user=removed.fullname)
if not auth or auth.user != removed:
url = node.web_url_for('node_setting')
message += (
u' You can re-authenticate on the <a href="{url}">Settings</a> page.'
).format(url=url)
#
return message
def after_set_privacy(self, node, permissions):
"""
:param Node node:
:param str permissions:
:return str: Alert message
"""
if not github_settings.SET_PRIVACY:
return
connect = GitHub.from_settings(self.user_settings)
data = connect.set_privacy(self.user, self.repo,
permissions == 'private')
if data is None or 'errors' in data:
repo = connect.repo(self.user, self.repo)
if repo is not None:
current_privacy = 'private' if repo.private else 'public'
else:
current_privacy = 'unknown'
return ('Could not set privacy for repo {user}::{repo}. '
'Current privacy status is {perm}.'.format(
user=self.user,
repo=self.repo,
perm=current_privacy,
))
return ('GitHub repo {user}::{repo} made {perm}.'.format(
user=self.user,
repo=self.repo,
perm=permissions,
))
def before_fork(self, node, user):
"""
:param Node node:
:param User user:
:return str: Alert message
"""
if self.user_settings and self.user_settings.owner == user:
return (
'Because you have authenticated the GitHub add-on for this '
'{cat}, forking it will also transfer your authorization to '
'the forked {cat}.').format(cat=node.project_or_component, )
return (
'Because this GitHub add-on has been authenticated by a different '
'user, forking it will not transfer authentication to the forked '
'{cat}.').format(cat=node.project_or_component, )
def after_fork(self, node, fork, user, save=True):
"""
:param Node node: Original node
:param Node fork: Forked node
:param User user: User creating fork
:param bool save: Save settings after callback
:return tuple: Tuple of cloned settings and alert message
"""
clone, _ = super(AddonGitHubNodeSettings, self).after_fork(node,
fork,
user,
save=False)
# Copy authentication if authenticated by forking user
if self.user_settings and self.user_settings.owner == user:
clone.user_settings = self.user_settings
message = ('GitHub authorization copied to forked {cat}.').format(
cat=fork.project_or_component, )
else:
message = (
'GitHub authorization not copied to forked {cat}. You may '
'authorize this fork on the <a href={url}>Settings</a> '
'page.').format(cat=fork.project_or_component,
url=fork.url + 'settings/')
if save:
clone.save()
return clone, message
def before_register(self, node, user):
"""
:param Node node:
:param User user:
:return str: Alert message
"""
category = node.project_or_component
if self.user_settings and self.user_settings.has_auth:
return (
u'The contents of GitHub add-ons cannot be registered at this time; '
u'the GitHub repository linked to this {category} will not be included '
u'as part of this registration.').format(**locals())
def before_make_public(self, node):
try:
is_private = self.is_private
except NotFoundError:
return None
if is_private:
return (
'This {cat} is connected to a private GitHub repository. Users '
'(other than contributors) will not be able to see the '
'contents of this repo unless it is made public on GitHub.'
).format(cat=node.project_or_component, )
def after_delete(self, node, user):
self.deauthorize(Auth(user=user), log=True, save=True)
#########
# Hooks #
#########
# TODO: Should Events be added here?
# TODO: Move hook logic to service
def add_hook(self, save=True):
if self.user_settings:
connect = GitHub.from_settings(self.user_settings)
secret = utils.make_hook_secret()
hook = connect.add_hook(
self.user, self.repo, 'web', {
'url':
urlparse.urljoin(
hook_domain,
os.path.join(self.owner.api_url, 'github', 'hook/')),
'content_type':
github_settings.HOOK_CONTENT_TYPE,
'secret':
secret,
})
if hook:
self.hook_id = hook.id
self.hook_secret = secret
if save:
self.save()
def delete_hook(self, save=True):
"""
:return bool: Hook was deleted
"""
if self.user_settings and self.hook_id:
connection = GitHub.from_settings(self.user_settings)
try:
response = connection.delete_hook(self.user, self.repo,
self.hook_id)
except (GitHubError, NotFoundError):
return False
if response:
self.hook_id = None
if save:
self.save()
return True
return False
class User(GuidStoredObject, AddonModelMixin):
redirect_mode = 'proxy'
# Node fields that trigger an update to the search engine on save
SEARCH_UPDATE_FIELDS = {
'fullname',
'given_name',
'middle_names',
'family_name',
'suffix',
'merged_by',
'date_disabled',
'jobs',
'schools',
'social',
}
SOCIAL_FIELDS = {
'orcid': 'http://orcid.com/{}',
'github': 'http://github.com/{}',
'scholar': 'http://scholar.google.com/citation?user={}',
'twitter': 'http://twitter.com/{}',
'personal': '{}',
'linkedIn': 'https://www.linkedin.com/profile/view?id={}',
'impactStory': 'https://impactstory.org/{}',
'researcherId': 'http://researcherid.com/rid/{}',
}
_id = fields.StringField(primary=True)
# NOTE: In the OSF, username is an email
# May be None for unregistered contributors
username = fields.StringField(required=False, unique=True, index=True)
password = fields.StringField()
fullname = fields.StringField(required=True, validate=string_required)
is_registered = fields.BooleanField()
# TODO: Migrate unclaimed users to the new style, then remove this attribute
# Note: No new users should be created where is_claimed is False.
# As of 9 Sep 2014, there were 331 legacy unclaimed users in the system.
# When those users are migrated to the new style, this attribute should be
# removed.
is_claimed = fields.BooleanField()
# Tags for internal use
system_tags = fields.StringField(list=True)
# Per-project unclaimed user data:
# Format: {
# <project_id>: {
# 'name': <name that referrer provided>,
# 'referrer_id': <user ID of referrer>,
# 'token': <token used for verification urls>,
# 'email': <email the referrer provided or None>,
# 'last_sent': <timestamp of last email sent to referrer or None>
# }
# ...
# }
# TODO: add validation
unclaimed_records = fields.DictionaryField(required=False)
# The user who merged this account
merged_by = fields.ForeignField('user', default=None, backref="merged")
#: Verification key used for resetting password
verification_key = fields.StringField()
emails = fields.StringField(list=True)
# Email verification tokens
# Format: {
# <token> : {'email': <email address>,
# 'expiration': <datetime>}
# }
email_verifications = fields.DictionaryField()
# Format: {
# 'list1': True,
# 'list2: False,
# ...
# }
mailing_lists = fields.DictionaryField()
aka = fields.StringField(list=True)
date_registered = fields.DateTimeField(auto_now_add=dt.datetime.utcnow)
# Watched nodes are stored via a list of WatchConfigs
watched = fields.ForeignField("WatchConfig", list=True, backref="watched")
# Recently added contributors stored via a list of users
recently_added = fields.ForeignField("user",
list=True,
backref="recently_added")
# CSL names
given_name = fields.StringField()
middle_names = fields.StringField()
family_name = fields.StringField()
suffix = fields.StringField()
# Employment history
# Format: {
# 'title': <position or job title>,
# 'institution': <institution or organization>,
# 'department': <department>,
# 'location': <location>,
# 'startMonth': <start month>,
# 'startYear': <start year>,
# 'endMonth': <end month>,
# 'endYear': <end year>,
# 'ongoing: <boolean>
# }
jobs = fields.DictionaryField(list=True, validate=validate_history_item)
# Educational history
# Format: {
# 'degree': <position or job title>,
# 'institution': <institution or organization>,
# 'department': <department>,
# 'location': <location>,
# 'startMonth': <start month>,
# 'startYear': <start year>,
# 'endMonth': <end month>,
# 'endYear': <end year>,
# 'ongoing: <boolean>
# }
schools = fields.DictionaryField(list=True, validate=validate_history_item)
# Social links
# Format: {
# 'personal': <personal site>,
# 'twitter': <twitter id>,
# }
social = fields.DictionaryField(validate=validate_social)
api_keys = fields.ForeignField('apikey', list=True, backref='keyed')
piwik_token = fields.StringField()
date_last_login = fields.DateTimeField()
date_confirmed = fields.DateTimeField()
# When the user was disabled.
date_disabled = fields.DateTimeField()
# Format: {
# 'node_id': 'timestamp'
# }
comments_viewed_timestamp = fields.DictionaryField()
_meta = {'optimistic': True}
def __repr__(self):
return '<User({0!r}) with id {1!r}>'.format(self.username, self._id)
@classmethod
def create_unregistered(cls, fullname, email=None):
"""Creates a new unregistered user.
:raises: DuplicateEmailError if a user with the given email address
is already in the database.
"""
user = cls(
username=email,
fullname=fullname,
)
user.update_guessed_names()
if email:
user.emails.append(email)
user.is_registered = False
return user
@classmethod
def create(cls, username, password, fullname):
user = cls(
username=username,
fullname=fullname,
)
user.update_guessed_names()
user.set_password(password)
return user
@classmethod
def create_unconfirmed(cls, username, password, fullname, do_confirm=True):
"""Create a new user who has begun registration but needs to verify
their primary email address (username).
"""
user = cls.create(username, password, fullname)
user.add_email_verification(username)
user.is_registered = False
return user
@classmethod
def create_confirmed(cls, username, password, fullname):
user = cls.create(username, password, fullname)
user.is_registered = True
user.is_claimed = True
user.date_confirmed = user.date_registered
return user
def update_guessed_names(self):
"""Updates the CSL name fields inferred from the the full name.
"""
parsed = utils.impute_names(self.fullname)
self.given_name = parsed['given']
self.middle_names = parsed['middle']
self.family_name = parsed['family']
self.suffix = parsed['suffix']
def register(self, username, password=None):
"""Registers the user.
"""
self.username = username
if password:
self.set_password(password)
if username not in self.emails:
self.emails.append(username)
self.is_registered = True
self.is_claimed = True
self.date_confirmed = dt.datetime.utcnow()
self.update_search()
self.update_search_nodes()
# Emit signal that a user has confirmed
signals.user_confirmed.send(self)
return self
def add_unclaimed_record(self, node, referrer, given_name, email=None):
"""Add a new project entry in the unclaimed records dictionary.
:param Node node: Node this unclaimed user was added to.
:param User referrer: User who referred this user.
:param str given_name: The full name that the referrer gave for this user.
:param str email: The given email address.
:returns: The added record
"""
if not node.can_edit(user=referrer):
raise PermissionsError(
'Referrer does not have permission to add a contributor '
'to project {0}'.format(node._primary_key))
project_id = node._primary_key
referrer_id = referrer._primary_key
if email:
clean_email = email.lower().strip()
else:
clean_email = None
record = {
'name': given_name,
'referrer_id': referrer_id,
'token': generate_confirm_token(),
'email': clean_email
}
self.unclaimed_records[project_id] = record
return record
def display_full_name(self, node=None):
"""Return the full name , as it would display in a contributor list for a
given node.
NOTE: Unclaimed users may have a different name for different nodes.
"""
if node:
unclaimed_data = self.unclaimed_records.get(
node._primary_key, None)
if unclaimed_data:
return unclaimed_data['name']
return self.fullname
@property
def is_active(self):
"""Returns True if the user is active. The user must have activated
their account, must not be deleted, suspended, etc.
:return: bool
"""
return (self.is_registered and self.password is not None
and not self.is_merged and not self.is_disabled
and self.is_confirmed())
def get_unclaimed_record(self, project_id):
"""Get an unclaimed record for a given project_id.
:raises: ValueError if there is no record for the given project.
"""
try:
return self.unclaimed_records[project_id]
except KeyError: # reraise as ValueError
raise ValueError(
'No unclaimed record for user {self._id} on node {project_id}'.
format(**locals()))
def get_claim_url(self, project_id, external=False):
"""Return the URL that an unclaimed user should use to claim their
account. Return ``None`` if there is no unclaimed_record for the given
project ID.
:param project_id: The project ID for the unclaimed record
:raises: ValueError if a record doesn't exist for the given project ID
:rtype: dict
:returns: The unclaimed record for the project
"""
uid = self._primary_key
base_url = settings.DOMAIN if external else '/'
unclaimed_record = self.get_unclaimed_record(project_id)
token = unclaimed_record['token']
return '{base_url}user/{uid}/{project_id}/claim/?token={token}'\
.format(**locals())
def set_password(self, raw_password):
"""Set the password for this user to the hash of ``raw_password``."""
self.password = generate_password_hash(raw_password)
def check_password(self, raw_password):
"""Return a boolean of whether ``raw_password`` was correct."""
if not self.password or not raw_password:
return False
return check_password_hash(self.password, raw_password)
def change_password(self, raw_old_password, raw_new_password,
raw_confirm_password):
"""Change the password for this user to the hash of ``raw_new_password``."""
raw_old_password = (raw_old_password or '').strip()
raw_new_password = (raw_new_password or '').strip()
raw_confirm_password = (raw_confirm_password or '').strip()
issues = []
if not self.check_password(raw_old_password):
issues.append('Old password is invalid')
elif raw_old_password == raw_new_password:
issues.append('Password cannot be the same')
if not raw_old_password or not raw_new_password or not raw_confirm_password:
issues.append('Passwords cannot be blank')
elif len(raw_new_password) < 6:
issues.append('Password should be at least six characters')
if raw_new_password != raw_confirm_password:
issues.append('Password does not match the confirmation')
if issues:
raise ChangePasswordError(issues)
self.set_password(raw_new_password)
def _set_email_token_expiration(self, token, expiration=None):
"""Set the expiration date for given email token.
:param str token: The email token to set the expiration for.
:param datetime expiration: Datetime at which to expire the token. If ``None``, the
token will expire after ``settings.EMAIL_TOKEN_EXPIRATION`` hours. This is only
used for testing purposes.
"""
expiration = expiration or (dt.datetime.utcnow() + dt.timedelta(
hours=settings.EMAIL_TOKEN_EXPIRATION))
self.email_verifications[token]['expiration'] = expiration
return expiration
def add_email_verification(self, email, expiration=None):
"""Add an email verification token for a given email."""
token = generate_confirm_token()
self.email_verifications[token] = {'email': email.lower()}
self._set_email_token_expiration(token, expiration=expiration)
return token
def get_confirmation_token(self, email, force=False):
"""Return the confirmation token for a given email.
:param str email: Email to get the token for.
:param bool force: If an expired token exists for the given email, generate a new
token and return that token.
:raises: ExpiredTokenError if trying to access a token that is expired and force=False.
:raises: KeyError if there no token for the email.
"""
for token, info in self.email_verifications.items():
if info['email'].lower() == email.lower():
if info['expiration'] < dt.datetime.utcnow():
if not force:
raise ExpiredTokenError(
'Token for email "{0}" is expired'.format(email))
else:
new_token = self.add_email_verification(email)
self.save()
return new_token
return token
raise KeyError('No confirmation token for email "{0}"'.format(email))
def get_confirmation_url(self, email, external=True, force=False):
"""Return the confirmation url for a given email.
:raises: ExpiredTokenError if trying to access a token that is expired.
:raises: KeyError if there is no token for the email.
"""
base = settings.DOMAIN if external else '/'
token = self.get_confirmation_token(email, force=force)
return "{0}confirm/{1}/{2}/".format(base, self._primary_key, token)
def verify_confirmation_token(self, token):
"""Return whether or not a confirmation token is valid for this user.
:rtype: bool
"""
if token in self.email_verifications.keys():
return self.email_verifications.get(
token)['expiration'] > dt.datetime.utcnow()
return False
def verify_claim_token(self, token, project_id):
"""Return whether or not a claim token is valid for this user for
a given node which they were added as a unregistered contributor for.
"""
try:
record = self.get_unclaimed_record(project_id)
except ValueError: # No unclaimed record for given pid
return False
return record['token'] == token
def confirm_email(self, token):
if self.verify_confirmation_token(token):
email = self.email_verifications[token]['email']
self.emails.append(email)
# Complete registration if primary email
if email.lower() == self.username.lower():
self.register(self.username)
self.date_confirmed = dt.datetime.utcnow()
# Revoke token
del self.email_verifications[token]
# Clear unclaimed records, so user's name shows up correctly on
# all projects
self.unclaimed_records = {}
self.save()
# Note: We must manually update search here because the fullname
# field has not changed
self.update_search()
self.update_search_nodes()
return True
else:
return False
def update_search_nodes(self):
"""Call `update_search` on all nodes on which the user is a
contributor. Needed to add self to contributor lists in search upon
registration or claiming.
"""
for node in self.node__contributed:
node.update_search()
def is_confirmed(self):
return bool(self.date_confirmed)
@property
def social_links(self):
return {
key: self.SOCIAL_FIELDS[key].format(val)
for key, val in self.social.items()
if val and self.SOCIAL_FIELDS.get(key)
}
@property
def biblio_name(self):
given_names = self.given_name + ' ' + self.middle_names
surname = self.family_name
if surname != given_names:
initials = [
name[0].upper() + '.' for name in given_names.split(' ')
if name and re.search(r'\w', name[0], re.I)
]
return u'{0}, {1}'.format(surname, ' '.join(initials))
return surname
@property
def given_name_initial(self):
"""
The user's preferred initialization of their given name.
Some users with common names may choose to distinguish themselves from
their colleagues in this way. For instance, there could be two
well-known researchers in a single field named "Robert Walker".
"Walker, R" could then refer to either of them. "Walker, R.H." could
provide easy disambiguation.
NOTE: The internal representation for this should never end with a
period. "R" and "R.H" would be correct in the prior case, but
"R.H." would not.
"""
return self.given_name[0]
@property
def url(self):
return '/{}/'.format(self._primary_key)
@property
def api_url(self):
return '/api/v1/profile/{0}/'.format(self._primary_key)
@property
def absolute_url(self):
return urlparse.urljoin(settings.DOMAIN, self.url)
@property
def display_absolute_url(self):
url = self.absolute_url
if url is not None:
return re.sub(r'https?:', '', url).strip('/')
@property
def deep_url(self):
return '/profile/{}/'.format(self._primary_key)
@property
def gravatar_url(self):
return filters.gravatar(self,
use_ssl=True,
size=settings.GRAVATAR_SIZE_ADD_CONTRIBUTOR)
def get_activity_points(self, db=None):
db = db or framework.mongo.database
return analytics.get_total_activity_count(self._primary_key, db=db)
@property
def is_disabled(self):
"""Whether or not this account has been disabled.
Abstracts ``User.date_disabled``.
:return: bool
"""
return self.date_disabled is not None
@is_disabled.setter
def is_disabled(self, val):
"""Set whether or not this account has been disabled."""
if val:
self.date_disabled = dt.datetime.utcnow()
else:
self.date_disabled = None
@property
def is_merged(self):
'''Whether or not this account has been merged into another account.
'''
return self.merged_by is not None
@property
def profile_url(self):
return '/{}/'.format(self._id)
def get_summary(self, formatter='long'):
return {
'user_fullname': self.fullname,
'user_profile_url': self.profile_url,
'user_display_name': name_formatters[formatter](self),
'user_is_claimed': self.is_claimed
}
def save(self, *args, **kwargs):
self.username = self.username.lower().strip(
) if self.username else None
ret = super(User, self).save(*args, **kwargs)
if self.SEARCH_UPDATE_FIELDS.intersection(ret) and self.is_confirmed():
self.update_search()
if settings.PIWIK_HOST and not self.piwik_token:
try:
piwik.create_user(self)
except (piwik.PiwikException, ValueError):
logger.error("Piwik user creation failed: " + self._id)
return ret
def update_search(self):
from website import search
try:
search.search.update_user(self)
except search.exceptions.SearchUnavailableError as e:
logger.exception(e)
log_exception()
@classmethod
def find_by_email(cls, email):
try:
user = cls.find_one(Q('emails', 'eq', email))
return [user]
except:
return []
def serialize(self, anonymous=False):
return {
'id':
utils.privacy_info_handle(self._primary_key, anonymous),
'fullname':
utils.privacy_info_handle(self.fullname, anonymous, name=True),
'registered':
self.is_registered,
'url':
utils.privacy_info_handle(self.url, anonymous),
'api_url':
utils.privacy_info_handle(self.api_url, anonymous),
}
###### OSF-Specific methods ######
def watch(self, watch_config):
"""Watch a node by adding its WatchConfig to this user's ``watched``
list. Raises ``ValueError`` if the node is already watched.
:param watch_config: The WatchConfig to add.
:param save: Whether to save the user.
"""
watched_nodes = [each.node for each in self.watched]
if watch_config.node in watched_nodes:
raise ValueError('Node is already being watched.')
watch_config.save()
self.watched.append(watch_config)
return None
def unwatch(self, watch_config):
"""Unwatch a node by removing its WatchConfig from this user's ``watched``
list. Raises ``ValueError`` if the node is not already being watched.
:param watch_config: The WatchConfig to remove.
:param save: Whether to save the user.
"""
for each in self.watched:
if watch_config.node._id == each.node._id:
each.__class__.remove_one(each)
return None
raise ValueError('Node not being watched.')
def is_watching(self, node):
'''Return whether a not a user is watching a Node.'''
watched_node_ids = set([config.node._id for config in self.watched])
return node._id in watched_node_ids
def get_recent_log_ids(self, since=None):
'''Return a generator of recent logs' ids.
:param since: A datetime specifying the oldest time to retrieve logs
from. If ``None``, defaults to 60 days before today. Must be a tz-aware
datetime because PyMongo's generation times are tz-aware.
:rtype: generator of log ids (strings)
'''
log_ids = []
# Default since to 60 days before today if since is None
# timezone aware utcnow
utcnow = dt.datetime.utcnow().replace(tzinfo=pytz.utc)
since_date = since or (utcnow - dt.timedelta(days=60))
for config in self.watched:
# Extract the timestamps for each log from the log_id (fast!)
# The first 4 bytes of Mongo's ObjectId encodes time
# This prevents having to load each Log Object and access their
# date fields
node_log_ids = [
log_id for log_id in config.node.logs._to_primary_keys()
if bson.ObjectId(log_id).generation_time > since_date
and log_id not in log_ids
]
# Log ids in reverse chronological order
log_ids = _merge_into_reversed(log_ids, node_log_ids)
return (l_id for l_id in log_ids)
def get_daily_digest_log_ids(self):
'''Return a generator of log ids generated in the past day
(starting at UTC 00:00).
'''
utcnow = dt.datetime.utcnow()
midnight = dt.datetime(utcnow.year,
utcnow.month,
utcnow.day,
0,
0,
0,
tzinfo=pytz.utc)
return self.get_recent_log_ids(since=midnight)
def merge_user(self, user, save=False):
"""Merge a registered user into this account. This user will be
a contributor on any project
:param user: A User object to be merged.
"""
# Inherit emails
self.emails.extend(user.emails)
# Inherit projects the user was a contributor for
for node in user.node__contributed:
node.add_contributor(
contributor=self,
permissions=node.get_permissions(user),
visible=node.get_visible(user),
log=False,
)
try:
node.remove_contributor(
contributor=user,
auth=Auth(user=self),
log=False,
)
except ValueError:
logger.error('Contributor {0} not in list on node {1}'.format(
user._id, node._id))
node.save()
# Inherits projects the user created
for node in user.node__created:
node.creator = self
node.save()
user.merged_by = self
user.save()
if save:
self.save()
return None
def get_projects_in_common(self, other_user, primary_keys=True):
"""Returns either a collection of "shared projects" (projects that both users are contributors for)
or just their primary keys
"""
if primary_keys:
projects_contributed_to = set(
self.node__contributed._to_primary_keys())
return projects_contributed_to.intersection(
other_user.node__contributed._to_primary_keys())
else:
projects_contributed_to = set(self.node__contributed)
return projects_contributed_to.intersection(
other_user.node__contributed)
def n_projects_in_common(self, other_user):
"""Returns number of "shared projects" (projects that both users are contributors for)"""
return len(self.get_projects_in_common(other_user, primary_keys=True))
class PreprintService(GuidStoredObject):
_id = fields.StringField(primary=True)
date_created = fields.DateTimeField(auto_now_add=True)
date_modified = fields.DateTimeField(auto_now=True)
provider = fields.ForeignField('PreprintProvider', index=True)
node = fields.ForeignField('Node', index=True)
is_published = fields.BooleanField(default=False, index=True)
date_published = fields.DateTimeField()
# This is a list of tuples of Subject id's. MODM doesn't do schema
# validation for DictionaryFields, but would unsuccessfully attempt
# to validate the schema for a list of lists of ForeignFields.
#
# Format: [[root_subject._id, ..., child_subject._id], ...]
subjects = fields.DictionaryField(list=True)
@property
def primary_file(self):
if not self.node:
return
return self.node.preprint_file
@property
def article_doi(self):
if not self.node:
return
return self.node.preprint_article_doi
@property
def is_preprint_orphan(self):
if not self.node:
return
return self.node.is_preprint_orphan
@property
def deep_url(self):
# Required for GUID routing
return '/preprints/{}/'.format(self._primary_key)
@property
def url(self):
return '/{}/'.format(self._id)
@property
def absolute_url(self):
return urlparse.urljoin(settings.DOMAIN, self.url)
@property
def absolute_api_v2_url(self):
path = '/preprints/{}/'.format(self._id)
return api_v2_url(path)
def get_subjects(self):
ret = []
for subj_list in self.subjects:
subj_hierarchy = []
for subj_id in subj_list:
subj = Subject.load(subj_id)
if subj:
subj_hierarchy += ({'id': subj_id, 'text': subj.text}, )
if subj_hierarchy:
ret.append(subj_hierarchy)
return ret
def set_subjects(self, preprint_subjects, auth, save=False):
if not self.node.has_permission(auth.user, ADMIN):
raise PermissionsError('Only admins can change a preprint\'s subjects.')
self.subjects = []
for subj_list in preprint_subjects:
subj_hierarchy = []
for s in subj_list:
subj_hierarchy.append(s)
if subj_hierarchy:
validate_subject_hierarchy(subj_hierarchy)
self.subjects.append(subj_hierarchy)
if save:
self.save()
def set_primary_file(self, preprint_file, auth, save=False):
if not self.node.has_permission(auth.user, ADMIN):
raise PermissionsError('Only admins can change a preprint\'s primary file.')
if not isinstance(preprint_file, StoredFileNode):
preprint_file = preprint_file.stored_object
if preprint_file.node != self.node or preprint_file.provider != 'osfstorage':
raise ValueError('This file is not a valid primary file for this preprint.')
# there is no preprint file yet! This is the first time!
if not self.node.preprint_file:
self.node.preprint_file = preprint_file
elif preprint_file != self.node.preprint_file:
# if there was one, check if it's a new file
self.node.preprint_file = preprint_file
self.node.add_log(
action=NodeLog.PREPRINT_FILE_UPDATED,
params={},
auth=auth,
save=False,
)
if save:
self.save()
self.node.save()
def set_published(self, published, auth, save=False):
if not self.node.has_permission(auth.user, ADMIN):
raise PermissionsError('Only admins can publish a preprint.')
if self.is_published and not published:
raise ValueError('Cannot unpublish preprint.')
self.is_published = published
if published:
if not (self.node.preprint_file and self.node.preprint_file.node == self.node):
raise ValueError('Preprint node is not a valid preprint; cannot publish.')
if not self.provider:
raise ValueError('Preprint provider not specified; cannot publish.')
if not self.subjects:
raise ValueError('Preprint must have at least one subject to be published.')
self.date_published = datetime.datetime.utcnow()
self.node._has_abandoned_preprint = False
self.node.add_log(action=NodeLog.PREPRINT_INITIATED, params={}, auth=auth, save=False)
if not self.node.is_public:
self.node.set_privacy(
self.node.PUBLIC,
auth=None,
log=True
)
if save:
self.node.save()
self.save()
def save(self, *args, **kwargs):
saved_fields = super(PreprintService, self).save(*args, **kwargs)
if saved_fields:
enqueue_task(on_preprint_updated.s(self._id))
class FileVersion(StoredObject):
"""A version of an OsfStorageFileNode. contains information
about where the file is located, hashes and datetimes
"""
_id = fields.StringField(primary=True,
default=lambda: str(bson.ObjectId()))
creator = fields.ForeignField('user')
identifier = fields.StringField(required=True)
# Date version record was created. This is the date displayed to the user.
date_created = fields.DateTimeField(auto_now_add=True)
# Dictionary specifying all information needed to locate file on backend
# {
# 'service': 'cloudfiles', # required
# 'container': 'osf', # required
# 'object': '20c53b', # required
# 'worker_url': '127.0.0.1',
# 'worker_host': 'upload-service-1',
# }
location = fields.DictionaryField(default=None,
validate=utils.validate_location)
# Dictionary containing raw metadata from upload service response
# {
# 'size': 1024, # required
# 'content_type': 'text/plain', # required
# 'date_modified': '2014-11-07T20:24:15', # required
# 'md5': 'd077f2',
# }
metadata = fields.DictionaryField()
size = fields.IntegerField()
content_type = fields.StringField()
# Date file modified on third-party backend. Not displayed to user, since
# this date may be earlier than the date of upload if the file already
# exists on the backend
date_modified = fields.DateTimeField()
@property
def location_hash(self):
return self.location['object']
@property
def archive(self):
return self.metadata.get('archive')
def is_duplicate(self, other):
return self.location_hash == other.location_hash
def update_metadata(self, metadata, save=True):
self.metadata.update(metadata)
# metadata has no defined structure so only attempt to set attributes
# If its are not in this callback it'll be in the next
self.size = self.metadata.get('size', self.size)
self.content_type = self.metadata.get('contentType', self.content_type)
if self.metadata.get('modified') is not None:
# TODO handle the timezone here the user that updates the file may see an
# Incorrect version
self.date_modified = parse_date(self.metadata['modified'],
ignoretz=True)
if save:
self.save()
def _find_matching_archive(self, save=True):
"""Find another version with the same sha256 as this file.
If found copy its vault name and glacier id, no need to create additional backups.
returns True if found otherwise false
"""
if 'sha256' not in self.metadata:
return False # Dont bother searching for nothing
if 'vault' in self.metadata and 'archive' in self.metadata:
# Shouldn't ever happen, but we already have an archive
return True # We've found ourself
qs = self.__class__.find(
Q('_id', 'ne', self._id) & Q('metadata.vault', 'ne', None)
& Q('metadata.archive', 'ne', None)
& Q('metadata.sha256', 'eq', self.metadata['sha256'])).limit(1)
if qs.count() < 1:
return False
other = qs[0]
try:
self.metadata['vault'] = other.metadata['vault']
self.metadata['archive'] = other.metadata['archive']
except KeyError:
return False
if save:
self.save()
return True
class ArchiveJob(StoredObject):
_id = fields.StringField(primary=True, default=lambda: str(ObjectId()))
# whether or not the ArchiveJob is complete (success or fail)
done = fields.BooleanField(default=False)
# whether or not emails have been sent for this ArchiveJob
sent = fields.BooleanField(default=False)
status = fields.StringField(default=ARCHIVER_INITIATED)
datetime_initiated = fields.DateTimeField(default=datetime.datetime.utcnow)
dst_node = fields.ForeignField('node', backref='active')
src_node = fields.ForeignField('node')
initiator = fields.ForeignField('user')
target_addons = fields.ForeignField('archivetarget', list=True)
# This field is used for stashing embargo URLs while still in the app context
# Format: {
# 'view': <str> url,
# 'approve': <str> url,
# 'disapprove': <str> url,
# }
meta = fields.DictionaryField()
def __repr__(self):
return (
'<{ClassName}(_id={self._id}, done={self.done}, '
' status={self.status}, src_node={self.src_node}, dst_node={self.dst_node})>'
).format(ClassName=self.__class__.__name__, self=self)
@property
def children(self):
return [
node.archive_job for node in self.dst_node.nodes if node.primary
]
@property
def parent(self):
parent_node = self.dst_node.parent_node
return parent_node.archive_job if parent_node else None
@property
def success(self):
return self.status == ARCHIVER_SUCCESS
@property
def pending(self):
return any([
target for target in self.target_addons
if target.status not in (ARCHIVER_SUCCESS, ARCHIVER_FAILURE)
])
def info(self):
return self.src_node, self.dst_node, self.initiator
def target_info(self):
return [{
'name': target.name,
'status': target.status,
'stat_result': target.stat_result,
'errors': target.errors
} for target in self.target_addons]
def archive_tree_finished(self):
if not self.pending:
return len([
ret for ret in
[child.archive_tree_finished() for child in self.children]
if ret
]) if len(self.children) else True
return False
def _fail_above(self):
"""Marks all ArchiveJob instances attached to Nodes above this as failed
"""
parent = self.parent
if parent:
parent.status = ARCHIVER_FAILURE
parent.save()
def _post_update_target(self):
"""Checks for success or failure if the ArchiveJob on self.dst_node
is finished
"""
if self.status == ARCHIVER_FAILURE:
return
if not self.pending:
self.done = True
if any([
target.status for target in self.target_addons
if target.status in ARCHIVER_FAILURE_STATUSES
]):
self.status = ARCHIVER_FAILURE
self._fail_above()
else:
self.status = ARCHIVER_SUCCESS
self.save()
def get_target(self, addon_short_name):
try:
return [
addon for addon in self.target_addons
if addon.name == addon_short_name
][0]
except IndexError:
return None
def _set_target(self, addon_short_name):
if self.get_target(addon_short_name):
return
target = ArchiveTarget(name=addon_short_name)
target.save()
self.target_addons.append(target)
def set_targets(self):
addons = []
for addon in [
self.src_node.get_addon(name)
for name in settings.ADDONS_ARCHIVABLE
if settings.ADDONS_ARCHIVABLE[name] != 'none'
]:
if not addon or not addon.complete or not isinstance(
addon, StorageAddonBase):
continue
archive_errors = getattr(addon, 'archive_errors', None)
if not archive_errors or (archive_errors and not archive_errors()):
if addon.config.short_name == 'dataverse':
addons.append(addon.config.short_name + '-draft')
addons.append(addon.config.short_name + '-published')
else:
addons.append(addon.config.short_name)
for addon in addons:
self._set_target(addon)
self.save()
def update_target(self,
addon_short_name,
status,
stat_result=None,
errors=None):
stat_result = stat_result or {}
errors = errors or []
target = self.get_target(addon_short_name)
target.status = status
target.errors = errors
target.stat_result = stat_result
target.save()
self._post_update_target()
class Sanction(StoredObject):
"""Sanction class is a generic way to track approval states"""
# Tell modularodm not to attach backends
_meta = {
'abstract': True,
}
_id = fields.StringField(primary=True, default=lambda: str(ObjectId()))
# Neither approved not cancelled
UNAPPROVED = 'unapproved'
# Has approval
APPROVED = 'approved'
# Rejected by at least one person
REJECTED = 'rejected'
# Embargo has been completed
COMPLETED = 'completed'
state = fields.StringField(default=UNAPPROVED,
validate=validators.choice_in((
UNAPPROVED,
APPROVED,
REJECTED,
COMPLETED,
)))
DISPLAY_NAME = 'Sanction'
# SHORT_NAME must correspond with the associated foreign field to query against,
# e.g. Node.find_one(Q(sanction.SHORT_NAME, 'eq', sanction))
SHORT_NAME = 'sanction'
APPROVAL_NOT_AUTHORIZED_MESSAGE = 'This user is not authorized to approve this {DISPLAY_NAME}'
APPROVAL_INVALID_TOKEN_MESSAGE = 'Invalid approval token provided for this {DISPLAY_NAME}.'
REJECTION_NOT_AUTHORIZED_MESSAEGE = 'This user is not authorized to reject this {DISPLAY_NAME}'
REJECTION_INVALID_TOKEN_MESSAGE = 'Invalid rejection token provided for this {DISPLAY_NAME}.'
# Controls whether or not the Sanction needs unanimous approval or just a single approval
ANY = 'any'
UNANIMOUS = 'unanimous'
mode = UNANIMOUS
initiation_date = fields.DateTimeField(
auto_now_add=datetime.datetime.utcnow)
# Expiration date-- Sanctions in the UNAPPROVED state that are older than their end_date
# are automatically made ACTIVE by a daily cron job
# Use end_date=None for a non-expiring Sanction
end_date = fields.DateTimeField(default=None)
# Sanction subclasses must have an initiated_by field
# initiated_by = fields.ForeignField('user', backref='initiated')
# Expanded: Dictionary field mapping admin IDs their approval status and relevant tokens:
# {
# 'b3k97': {
# 'has_approved': False,
# 'approval_token': 'Pew7wj1Puf7DENUPFPnXSwa1rf3xPN',
# 'rejection_token': 'TwozClTFOic2PYxHDStby94bCQMwJy'}
# }
approval_state = fields.DictionaryField()
def __repr__(self):
return '<Sanction(end_date={self.end_date!r}) with _id {self._id!r}>'.format(
self=self)
@property
def is_pending_approval(self):
return self.state == Sanction.UNAPPROVED
@property
def is_approved(self):
return self.state == Sanction.APPROVED
@property
def is_rejected(self):
return self.state == Sanction.REJECTED
def approve(self, user):
raise NotImplementedError(
"Sanction subclasses must implement an approve method.")
def reject(self, user):
raise NotImplementedError(
"Sanction subclasses must implement an approve method.")
def _on_reject(self, user):
"""Callback for rejection of a Sanction
:param User user:
"""
raise NotImplementedError(
'Sanction subclasses must implement an #_on_reject method')
def _on_complete(self, user):
"""Callback for when a Sanction has approval and enters the ACTIVE state
:param User user:
"""
raise NotImplementedError(
'Sanction subclasses must implement an #_on_complete method')
def forcibly_reject(self):
self.state = Sanction.REJECTED
class DropboxNodeSettings(StorageAddonBase, AddonOAuthNodeSettingsBase):
oauth_provider = DropboxProvider
serializer = DropboxSerializer
folder = fields.StringField(default=None)
#: Information saved at the time of registration
#: Note: This is unused right now
registration_data = fields.DictionaryField()
_folder_data = None
_api = None
@property
def api(self):
"""authenticated ExternalProvider instance"""
if self._api is None:
self._api = DropboxProvider(self.external_account)
return self._api
@property
def folder_id(self):
return self.folder
@property
def folder_name(self):
return os.path.split(self.folder or '')[1]
@property
def folder_path(self):
return self.folder
@property
def display_name(self):
return '{0}: {1}'.format(self.config.full_name, self.folder)
def clear_settings(self):
self.folder = None
def fetch_folder_name(self):
return self.folder
def set_folder(self, folder, auth):
self.folder = folder
# Add log to node
self.nodelogger.log(action="folder_selected", save=True)
# TODO: Is this used? If not, remove this and perhaps remove the 'deleted' field
def delete(self, save=True):
self.deauthorize(add_log=False)
super(DropboxNodeSettings, self).delete(save)
def deauthorize(self, auth=None, add_log=True):
"""Remove user authorization from this node and log the event."""
folder = self.folder
self.clear_settings()
if add_log:
extra = {'folder': folder}
self.nodelogger.log(action="node_deauthorized",
extra=extra,
save=True)
self.clear_auth()
def serialize_waterbutler_credentials(self):
if not self.has_auth:
raise exceptions.AddonError('Addon is not authorized')
return {'token': self.external_account.oauth_key}
def serialize_waterbutler_settings(self):
if not self.folder:
raise exceptions.AddonError('Folder is not configured')
return {'folder': self.folder}
def create_waterbutler_log(self, auth, action, metadata):
url = self.owner.web_url_for('addon_view_or_download_file',
path=metadata['path'].strip('/'),
provider='dropbox')
self.owner.add_log(
'dropbox_{0}'.format(action),
auth=auth,
params={
'project': self.owner.parent_id,
'node': self.owner._id,
'path': metadata['path'],
'folder': self.folder,
'urls': {
'view': url,
'download': url + '?action=download'
},
},
)
def __repr__(self):
return u'<DropboxNodeSettings(node_id={self.owner._primary_key!r})>'.format(
self=self)
##### Callback overrides #####
def before_register_message(self, node, user):
"""Return warning text to display if user auth will be copied to a
registration.
"""
category = node.project_or_component
if self.user_settings and self.user_settings.has_auth:
return (
u'The contents of Dropbox add-ons cannot be registered at this time; '
u'the Dropbox folder linked to this {category} will not be included '
u'as part of this registration.').format(**locals())
# backwards compatibility
before_register = before_register_message
def before_remove_contributor_message(self, node, removed):
"""Return warning text to display if removed contributor is the user
who authorized the Dropbox addon
"""
if self.user_settings and self.user_settings.owner == removed:
category = node.project_or_component
name = removed.fullname
return (
u'The Dropbox add-on for this {category} is authenticated by {name}. '
'Removing this user will also remove write access to Dropbox '
'unless another contributor re-authenticates the add-on.'
).format(**locals())
# backwards compatibility
before_remove_contributor = before_remove_contributor_message
# Note: Registering Dropbox content is disabled for now; leaving this code
# here in case we enable registrations later on.
# @jmcarp
# def after_register(self, node, registration, user, save=True):
# """After registering a node, copy the user settings and save the
# chosen folder.
#
# :return: A tuple of the form (cloned_settings, message)
# """
# clone, message = super(DropboxNodeSettings, self).after_register(
# node, registration, user, save=False
# )
# # Copy user_settings and add registration data
# if self.has_auth and self.folder is not None:
# clone.user_settings = self.user_settings
# clone.registration_data['folder'] = self.folder
# if save:
# clone.save()
# return clone, message
def after_fork(self, node, fork, user, save=True):
"""After forking, copy user settings if the user is the one who authorized
the addon.
:return: A tuple of the form (cloned_settings, message)
"""
clone, _ = super(DropboxNodeSettings, self).after_fork(node=node,
fork=fork,
user=user,
save=False)
if self.user_settings and self.user_settings.owner == user:
clone.user_settings = self.user_settings
message = ('Dropbox authorization copied to forked {cat}.').format(
cat=fork.project_or_component)
else:
message = (
u'Dropbox authorization not copied to forked {cat}. You may '
'authorize this fork on the <u><a href="{url}">Settings</a></u> '
'page.').format(url=fork.web_url_for('node_setting'),
cat=fork.project_or_component)
if save:
clone.save()
return clone, message
def after_remove_contributor(self, node, removed, auth=None):
"""If the removed contributor was the user who authorized the Dropbox
addon, remove the auth credentials from this node.
Return the message text that will be displayed to the user.
"""
if self.user_settings and self.user_settings.owner == removed:
self.user_settings = None
self.save()
message = (
u'Because the Dropbox add-on for {category} "{title}" was authenticated '
u'by {user}, authentication information has been deleted.'
).format(category=node.category_display,
title=node.title,
user=removed.fullname)
if not auth or auth.user != removed:
url = node.web_url_for('node_setting')
message += (
u' You can re-authenticate on the <u><a href="{url}">Settings</a></u> page.'
).format(url=url)
#
return message
def after_delete(self, node, user):
self.deauthorize(Auth(user=user), add_log=True)
self.save()
class AddonS3NodeSettings(StorageAddonBase, AddonNodeSettingsBase):
registration_data = fields.DictionaryField()
bucket = fields.StringField()
user_settings = fields.ForeignField('addons3usersettings',
backref='authorized')
@property
def folder_name(self):
return self.bucket
def find_or_create_file_guid(self, path):
path = path.lstrip('/')
return S3GuidFile.get_or_create(node=self.owner, path=path)
@property
def display_name(self):
return u'{0}: {1}'.format(self.config.full_name, self.bucket)
@property
def complete(self):
return self.has_auth and self.bucket is not None
def authorize(self, user_settings, save=False):
self.user_settings = user_settings
self.owner.add_log(
action='s3_node_authorized',
params={
'project': self.owner.parent_id,
'node': self.owner._id,
},
auth=Auth(user_settings.owner),
)
if save:
self.save()
def deauthorize(self, auth=None, log=True, save=False):
self.registration_data = {}
self.bucket = None
self.user_settings = None
if log:
self.owner.add_log(
action='s3_node_deauthorized',
params={
'project': self.owner.parent_id,
'node': self.owner._id,
},
auth=auth,
)
if save:
self.save()
def delete(self, save=True):
self.deauthorize(log=False, save=False)
super(AddonS3NodeSettings, self).delete(save=save)
def serialize_waterbutler_credentials(self):
if not self.has_auth:
raise exceptions.AddonError(
'Cannot serialize credentials for S3 addon')
return {
'access_key': self.user_settings.access_key,
'secret_key': self.user_settings.secret_key,
}
def serialize_waterbutler_settings(self):
if not self.bucket:
raise exceptions.AddonError(
'Cannot serialize settings for S3 addon')
return {'bucket': self.bucket}
def create_waterbutler_log(self, auth, action, metadata):
url = self.owner.web_url_for('addon_view_or_download_file',
path=metadata['path'],
provider='s3')
self.owner.add_log(
's3_{0}'.format(action),
auth=auth,
params={
'project': self.owner.parent_id,
'node': self.owner._id,
'path': metadata['materialized'],
'bucket': self.bucket,
'urls': {
'view': url,
'download': url + '?action=download'
}
},
)
def to_json(self, user):
ret = super(AddonS3NodeSettings, self).to_json(user)
user_settings = user.get_addon('s3')
ret.update({
'bucket':
self.bucket or '',
'has_bucket':
self.bucket is not None,
'user_is_owner': (self.user_settings
and self.user_settings.owner == user),
'user_has_auth':
bool(user_settings) and user_settings.has_auth,
'node_has_auth':
self.has_auth,
'owner':
None,
'bucket_list':
None,
'is_registration':
self.owner.is_registration,
'valid_credentials':
user_settings and user_settings.is_valid,
})
if self.has_auth:
ret['owner'] = self.user_settings.owner.fullname
ret['owner_url'] = self.user_settings.owner.url
ret['node_has_auth'] = True
return ret
@property
def is_registration(self):
return True if self.registration_data else False
@property
def has_auth(self):
return bool(self.user_settings and self.user_settings.has_auth)
#TODO Update callbacks
def before_register(self, node, user):
"""
:param Node node:
:param User user:
:return str: Alert message
"""
category = node.project_or_component
if self.user_settings and self.user_settings.has_auth:
return (
u'The contents of S3 add-ons cannot be registered at this time; '
u'the S3 bucket linked to this {category} will not be included '
u'as part of this registration.').format(**locals())
def after_fork(self, node, fork, user, save=True):
"""
:param Node node: Original node
:param Node fork: Forked node
:param User user: User creating fork
:param bool save: Save settings after callback
:return tuple: Tuple of cloned settings and alert message
"""
clone, _ = super(AddonS3NodeSettings, self).after_fork(node,
fork,
user,
save=False)
# Copy authentication if authenticated by forking user
if self.user_settings and self.user_settings.owner == user:
clone.user_settings = self.user_settings
clone.bucket = self.bucket
message = (
'Amazon Simple Storage authorization copied to forked {cat}.'
).format(cat=fork.project_or_component, )
else:
message = (
'Amazon Simple Storage authorization not copied to forked {cat}. You may '
'authorize this fork on the <a href={url}>Settings</a> '
'page.').format(cat=fork.project_or_component,
url=fork.url + 'settings/')
if save:
clone.save()
return clone, message
def before_fork(self, node, user):
"""
:param Node node:
:param User user:
:return str: Alert message
"""
if self.user_settings and self.user_settings.owner == user:
return (
'Because you have authenticated the S3 add-on for this '
'{cat}, forking it will also transfer your authorization to '
'the forked {cat}.').format(cat=node.project_or_component, )
return (
'Because this S3 add-on has been authenticated by a different '
'user, forking it will not transfer authentication to the forked '
'{cat}.').format(cat=node.project_or_component, )
def before_remove_contributor(self, node, removed):
"""
:param Node node:
:param User removed:
:return str: Alert message
"""
if self.user_settings and self.user_settings.owner == removed:
return (
'The Amazon Simple Storage add-on for this {category} is authenticated '
'by {user}. Removing this user will also remove access '
'to {bucket} unless another contributor re-authenticates.'
).format(category=node.project_or_component,
user=removed.fullname,
bucket=self.bucket)
def after_remove_contributor(self, node, removed, auth=None):
"""
:param Node node:
:param User removed:
:return str: Alert message
"""
if self.user_settings and self.user_settings.owner == removed:
self.user_settings = None
self.bucket = None
self.save()
message = (
u'Because the Amazon Simple Storage add-on for {category} "{title}" was '
u'authenticated by {user}, authentication information has been deleted.'
).format(category=node.category_display,
title=node.title,
user=removed.fullname)
if not auth or auth.user != removed:
url = node.web_url_for('node_setting')
message += (
u' You can re-authenticate on the <a href="{url}">Settings</a> page.'
).format(url=url)
#
return message
def after_delete(self, node, user):
self.deauthorize(Auth(user=user), log=True, save=True)
class DraftRegistrationApproval(Sanction):
mode = Sanction.ANY
# Since draft registrations that require approval are not immediately registered,
# meta stores registration_choice and embargo_end_date (when applicable)
meta = fields.DictionaryField(default=dict)
def _send_rejection_email(self, user, draft):
schema = draft.registration_schema
prereg_schema = prereg_utils.get_prereg_schema()
if schema._id == prereg_schema._id:
mails.send_mail(user.username,
mails.PREREG_CHALLENGE_REJECTED,
user=user,
draft_url=draft.absolute_url)
else:
raise NotImplementedError(
'TODO: add a generic email template for registration approvals'
)
def approve(self, user):
if settings.PREREG_ADMIN_TAG not in user.system_tags:
raise PermissionsError(
"This user does not have permission to approve this draft.")
self.state = Sanction.APPROVED
self._on_complete(user)
def reject(self, user):
if settings.PREREG_ADMIN_TAG not in user.system_tags:
raise PermissionsError(
"This user does not have permission to approve this draft.")
self.state = Sanction.REJECTED
self._on_reject(user)
def _on_complete(self, user):
from website.project.model import DraftRegistration
draft = DraftRegistration.find_one(Q('approval', 'eq', self))
auth = Auth(draft.initiator)
registration = draft.register(auth=auth, save=True)
registration_choice = self.meta['registration_choice']
if registration_choice == 'immediate':
sanction = functools.partial(registration.require_approval,
draft.initiator)
elif registration_choice == 'embargo':
sanction = functools.partial(
registration.embargo_registration, draft.initiator,
parse_date(self.meta.get('embargo_end_date'), ignoretz=True))
else:
raise ValueError(
"'registration_choice' must be either 'embargo' or 'immediate'"
)
sanction(notify_initiator_on_complete=True)
def _on_reject(self, user, *args, **kwargs):
from website.project.model import DraftRegistration
# clear out previous registration options
self.meta = {}
self.save()
draft = DraftRegistration.find_one(Q('approval', 'eq', self))
self._send_rejection_email(draft.initiator, draft)
