def testVmSeriesPlot(self):
utils.setDefaultDt(elecdt=simdt)
utils.assignDefaultTicks(modelRoot=self.m2.path)
utils.assignTicks({0:'%s/##[ISA=HSolve]' % (self.m1.path),
1: '%s/##[ISA=PulseGen]' % (self.m1.path),
7: '%s/##[ISA=VClamp]' % (self.m1.path)})
moose.reinit()
tick = moose.element('/clock/tick')
for ii in range(10):
field = 'proc%d' % (ii)
print 'Connected to', field
for n in tick.neighbours[field]:
print '\t', n
ts = datetime.now()
moose.start(simtime)
te = datetime.now()
td = te - ts
t1 = np.linspace(0, simtime, len(self.p1['somaVm'].vec))
t2 = np.linspace(0, simtime, len(self.p2['somaVm'].vec))
pylab.plot(t1, self.p1['somaVm'].vec, label='hsolve')
pylab.plot(t2, self.p2['somaVm'].vec, label='euler')
config.logger.info('Finished simulation of %g s with %d process threads in %g s' % (simtime, moose.NUMPTHREADS, td.seconds + 1e-6 * td.microseconds))
hsolve_data_file = os.path.join(config.data_dir, 'hsolve_tcr_%s.csv' % (config.filename_suffix))
eeuler_data_file = os.path.join(config.data_dir, 'ee_tcr_%s.csv' % (config.filename_suffix))
np.savetxt(hsolve_data_file, np.vstack((t1, self.p1['somaVm'].vec)).transpose())
np.savetxt(eeuler_data_file, np.vstack((t2, self.p2['somaVm'].vec)).transpose())
print 'Saved Exp Euler data in %s\nHSolve data in %s' % (hsolve_data_file, eeuler_data_file)
pylab.legend()
pylab.show()
def doResetAndRun(self, tickDtMap, tickTargetMap, simtime, updateInterval):
self._pause = False
self._updateInterval = updateInterval
self._simtime = simtime
utils.updateTicks(tickDtMap)
utils.assignTicks(tickTargetMap)
self.resetAndRun.emit()
moose.reinit()
QtCore.QTimer.singleShot(0, self.run)