def ihexdump(mem, start_addr=0, compress=False):
line_fmt = '{addr:08x} {0:8/ /23} {0:8/ /23} |{1:16//16}|'
exs = [Ex(fmt='x', sz=1, endianess='='), Ex(fmt='c', sz=1, endianess='=')]
it = Formatter(line_fmt, '*', *exs).lines(mem, start_addr, compress)
if compress:
yield from unique_justseen(it)
else:
yield from it
def detectValley(self, msg):
#TODO: clean this function
#TODO: check if the hegemony scores are not too old..
# zTd, zDt, zS, zOrig, zAS, zPfx, path, zPro, zOr, z0, z1, z2, z3, z4, z5 = msg
path = list(unique_justseen(msg[4]))
origas = path[-1]
if not origas in self.hegemony:
return
hege = self.hegemony[origas]
hegeAll = map(lambda x: round(hege[x], 2), path[1:])
# hegeAll = map(lambda x: hege[x], path[1:])
hege = list(unique_justseen(hegeAll))
hegeDiff = np.diff(hege)
signChange = len(list(itertools.groupby(hegeDiff, lambda x: x >= 0)))
if signChange > 1: # and not "27064" in path and not "27065" in path and not "27066" in path:
# print "(pathMonitor) anomaly: %s (%s)" % (path[1:],hege)
# Find suspicious transit AS
prev = hegeAll[0]
goingDown = False
for i, d in enumerate(hegeAll[1:]):
if goingDown and d > prev:
#TODO compute anomalous score
if not self.saverQueue is None:
self.saverQueue.put(("anomalouspath", [
msg[1],
str(msg), origas, path[i + 1],
str(hege), d
]))
# print "(pathMonitor) anomalous transit: %s" % path[i+1]
# anomalousTransit[path[i+1]]+=1 #+1 because we ignore the peer AS in hegeAll
if d >= prev:
goingDown = False
else:
goingDown = True
prev = d
def _obtain_routes(self, pass_through_waypoint: carla.Waypoint, total_length_m: float) \
-> List[List[carla.Transform]]:
part_length_m = total_length_m / 2
forward_routes = self._topology.get_forward_routes(pass_through_waypoint, part_length_m)
backward_routes = self._topology.get_backward_routes(pass_through_waypoint, part_length_m)
routes = [
backward_route + forward_route
for backward_route in backward_routes for forward_route in forward_routes
]
return [list(unique_justseen(r)) for r in routes]
def _resample_route(self, route: List[carla.Transform],
step_m: float) -> List[carla.Transform]:
assert len(route) > 1
try:
positions = [
Transform.from_carla_transform(transform).position
for transform in route
]
positions = unique_justseen(positions)
positions = resample_points(positions, step_m=step_m)
route = positions_to_transforms(positions)
return route
except Exception:
LOGGER.error(f'#route={len(route)} route={route}')
raise
def remove_duplicate_character(list_string):
result = []
for s in list_string:
if 'oo' in s:
result.append(s)
else:
s = ''.join(list(unique_justseen(list(s))))
# replace acronym word by correct word
if s in acronym_words:
s = [key for key, value in data.items() if s in value][0]
if s.isalnum() is False:
continue
result.append(s)
return result
def resample_points(positions: List[Union[Vector2, Vector3]], step_m=1) -> List[Vector2]:
"""Interpolates points so they are evenly spaced (1 meter between each point)"""
positions = [convert_to_vector2(p) for p in positions]
points = np.array([p.as_numpy() for p in positions])
assert len(list(unique_justseen(positions))) == len(positions) # breaks resampling code
x, y = zip(*points)
DEGREE_ONE_SO_WE_HAVE_POLYLINE = 1
f, u = interpolate.splprep([x, y], s=0, k=DEGREE_ONE_SO_WE_HAVE_POLYLINE, per=0)
distance = np.sqrt(np.sum(np.diff(points, axis=0) ** 2, axis=1)).sum()
linspace = np.linspace(0, 1, int(distance / step_m))
x, y = interpolate.splev(linspace, f)
points_fitted = np.stack([x, y], axis=1)
return [Vector2.from_numpy(p) for p in points_fitted]
def wrapper(*args, **kwargs):
return unique_justseen(func(*args, **kwargs))
def test_custom_key(self):
"""ensure the custom key comparison works"""
u = mi.unique_justseen('AABCcAD', str.lower)
self.assertEqual(list('ABCAD'), list(u))
def test_justseen(self):
"""ensure only last item is remembered"""
u = mi.unique_justseen('AAAABBBCCDABB')
self.assertEqual(list('ABCDAB'), list(u))
def test_custom_key(self):
"""ensure the custom key comparison works"""
u = mi.unique_justseen('AABCcAD', str.lower)
self.assertEqual(list('ABCAD'), list(u))
def test_justseen(self):
"""ensure only last item is remembered"""
u = mi.unique_justseen('AAAABBBCCDABB')
self.assertEqual(list('ABCDAB'), list(u))
def get_topics(iterable):
for q in more_itertools.unique_justseen(
(q for q in get_questions(iterable)), key=lambda x: x['qid']):
topic = {k: q[k] for k in ('qid', 'question')}
yield topic['question'], topic
def idisplay(spec,
mem,
endianess='=',
start_addr=0,
compress=False,
extra_kargs={}):
'''
>>> b1 = bytes.fromhex('255044462d312e320d25e2e3cfd30d0a323234372030206f626a0d3c3c200d2f4c696e656172697a65642031200d')
'db': display lines of 16 bytes from <mem> showing the address,
then the bytes in hexadecimal and then the same bytes
in ASCII. If the byte is not printable, a period is used.
>>> display('db', b1)
00000000 25 50 44 46 2d 31 2e 32-0d 25 e2 e3 cf d3 0d 0a |%PDF-1.2.%......|
00000010 32 32 34 37 20 30 20 6f-62 6a 0d 3c 3c 20 0d 2f |2247 0 obj.<< ./|
00000020 4c 69 6e 65 61 72 69 7a-65 64 20 31 20 0d |Linearized 1 . |
'dc': display lines of 8 words (4 bytes each) from <mem> showing
the address then the 8 words in hexadecimal and then the
same bytes in ASCII. If the byte is not printable, a period
is used.
Note: the endianess by default is the endianess if the
host/machine but it can be changed to big endian (>) or
little endian (<).
Note: if the input is not multiple of 4, the last bytes
will not be displayed in the hexadecimal part because
they don't form a 4-bytes word, however they will be
displayed in the ASCII part.
>>> display('dc', b1)
00000000 46445025 322e312d e3e2250d 0a0dd3cf |%PDF-1.2.%......|
00000010 37343232 6f203020 3c0d6a62 2f0d203c |2247 0 obj.<< ./|
00000020 656e694c 7a697261 31206465 |Linearized 1 . |
>>> display('dc', b1, endianess='>')
00000000 25504446 2d312e32 0d25e2e3 cfd30d0a |%PDF-1.2.%......|
00000010 32323437 2030206f 626a0d3c 3c200d2f |2247 0 obj.<< ./|
00000020 4c696e65 6172697a 65642031 |Linearized 1 . |
'dd': display lines of 4 words (4 bytes each) from <mem> like in 'dc'
but without the ASCII representation.
>>> display('dd', b1)
00000000 46445025 322e312d e3e2250d 0a0dd3cf
00000010 37343232 6f203020 3c0d6a62 2f0d203c
00000020 656e694c 7a697261 31206465
'dD': display lines of 4 double precision float (8 bytes each)
from <mem>.
>>> display('dD', b1)
00000000 5.599436e-67 3.031161e-260 1.917431e+227 4.797675e-82
00000020 4.619119e+281
'df': like 'dD' but display simple precision floats (4 bytes each)
>>> display('df', b1)
00000000 1.256404e+04 1.013931e-08 -8.343268e+21 6.828740e-33
00000010 1.074052e-05 4.957578e+28 8.631321e-03 1.283533e-10
00000020 7.036660e+22 3.030313e+35 2.334013e-09
'dq': display lines of 2 quads (8 bytes each) from <mem>
>>> display('dq', b1)
00000000 322e312d46445025 0a0dd3cfe3e2250d
00000010 6f20302037343232 2f0d203c3c0d6a62
00000020 7a697261656e694c
'uu': disassembly the memory into instructions. Display as raw bytes
the pieces of memory that couldn't be disassembled.
>>> display('uu', b1)
00000000 and eax, 0x2d464450
00000005 xor dword ptr [rsi], ebp
00000007 xor cl, byte ptr [rip - 0x301c1ddb]
0000000d ror dword ptr [rip + 0x3432320a], cl
00000013 .byte 0x37
00000014 and byte ptr [rax], dh
00000016 and byte ptr [rdi + 0x62], ch
00000019 push 0xd
0000001b cmp al, 0x3c
0000001d and byte ptr [rip + 0x6e694c2f], cl
00000023 .byte 0x65
00000024 .byte 0x61
00000025 jb 0x90
00000027 jp 0x8e
00000029 and byte ptr fs:[rcx], dh
0000002c .byte 0x20
0000002d .byte 0x0d
References:
https://docs.microsoft.com/en-us/windows-hardware/drivers/debugger/d--da--db--dc--dd--dd--df--dp--dq--du--dw--dw--dyb--dyd--display-memor
https://docs.microsoft.com/en-us/windows-hardware/drivers/debugger/u--unassemble-
'''
if spec == 'db':
line_fmt = '{addr:08x} {0:8/ /23}-{0:8/ /23} |{1:16//16}|'
exs = [
Ex(fmt='x', sz=1, endianess=endianess),
Ex(fmt='c', sz=1, endianess=endianess)
]
elif spec == 'dc':
line_fmt = '{addr:08x} {0:4/ /35} |{1:16//16}|'
exs = [
Ex(fmt='x', sz=4, endianess=endianess),
Ex(fmt='c', sz=1, endianess=endianess)
]
elif spec == 'dd':
line_fmt = '{addr:08x} {0:4/ /19}'
exs = [Ex(fmt='x', sz=4, endianess=endianess)]
elif spec == 'dD':
line_fmt = '{addr:08x} {0:4/ }'
exs = [Ex(fmt='f', sz=8, endianess=endianess)]
elif spec == 'df':
line_fmt = '{addr:08x} {0:4/ }'
exs = [Ex(fmt='f', sz=4, endianess=endianess)]
elif spec == 'dq':
line_fmt = '{addr:08x} {0:2/ }'
exs = [Ex(fmt='x', sz=8, endianess=endianess)]
elif spec == 'uu':
line_fmt = '{addr:08x} {0:1}'
exs = [
Ex(fmt='i',
sz=0,
endianess=endianess,
extra_kargs={
'arch': extra_kargs.get('arch', 'x86'),
'mode': extra_kargs.get('mode', 64)
})
]
else:
raise ValueError("Spec '%s' not supported." % spec)
it = Formatter(line_fmt, '*', *exs).lines(mem, start_addr, compress)
if compress:
yield from unique_justseen(it)
else:
yield from it
def pathDerivativeDist():
space = 1
af = 4
outDir = "../results/longStats_space%s_ipv%s/" % (space, af)
dataDirectory = "/data/routeviews/archive.routeviews.org/route-views.linx/bgpdata/"
filename = dataDirectory+"2016.06/UPDATES/updates.20160601.0000.bz2"
centralityFile = outDir+"/%s%02d%02d_af%s.pickle" % (2016, 6, 15, af)
asAggProb, asProb = pickle.load(open(centralityFile,"rb"))
allDiff = []
linDiff = []
if filename.startswith("@bgpstream:"):
p1 = Popen(["bgpreader", "-m", "-w", filename.rpartition(":")[2], "-p", "routeviews", "-c", "route-views.linx", "-t", "updates"], stdout=PIPE)
else:
p1 = Popen(["bgpdump", "-m", "-v", filename], stdout=PIPE, bufsize=-1)
for line in p1.stdout:
res = line[:-1].split('|',15)
if res[5] == "0.0.0.0/0":
continue
if af != 0:
if af == 4 and ":" in res[5]:
continue
elif af == 6 and "." in res[5]:
continue
if res[2] == "W":
continue
else:
zTd, zDt, zS, zOrig, zAS, zPfx, sPath, zPro, zOr, z0, z1, z2, z3, z4, z5 = res
path = list(unique_justseen(sPath.split(" ")))
try :
# hegeAll = map(lambda x: round(asAggProb[x],3), path[1:-1])
hegeAll = map(lambda x: asAggProb[x], path)
hegeDiff = np.diff(hegeAll)
allDiff.extend(list(hegeDiff))
N = 11
dim = np.linspace(0,1,N)
interpData = np.interp(dim, np.linspace(0,1,len(hegeAll)), hegeAll)
linDiff.append(interpData)
except Exception:
# print path
# print "New AS"
continue
plt.figure()
ecdf(allDiff)
plt.xlim([-0.1, 0.1])
plt.xlabel("Hegemony derivative")
plt.ylabel("CDF")
plt.tight_layout()
plt.savefig("../results/pathDerivative/derivativeDist.pdf")
lda = np.array(linDiff)
plt.figure()
# plt.plot(dim, lda.mean(axis=0),"o-")
plt.errorbar(dim, lda.mean(axis=0), lda.std(axis=0)/np.sqrt(N), fmt="o-")
plt.xlabel("Relative position in the path")
plt.ylabel("AS hegemony")
plt.xlim([-0.03, 1.03])
plt.tight_layout()
plt.savefig("../results/pathDerivative/meanHegemony.pdf")
return lda
def xml_create_tag(xmltree,
xpath,
element,
place_index=None,
tag_order=None,
occurrences=None,
correct_order=True,
several=True):
"""
This method evaluates an xpath expression and creates a tag in a xmltree under the
returned nodes.
If there are no nodes under the specified xpath an error is raised.
The tag is appended by default, but can be inserted at a certain index (`place_index`)
or can be inserted according to a given order of tags
:param xmltree: an xmltree that represents inp.xml
:param xpath: a path where to place a new tag
:param element: a tag name or etree Element to be created
:param place_index: defines the place where to put a created tag
:param tag_order: defines a tag order
:param occurrences: int or list of int. Which occurence of the parent nodes to create a tag.
By default all nodes are used.
:param correct_order: bool, if True (default) and a tag_order is given, that does not correspond to the given order
in the xmltree (only order wrong no unknown tags) it will be corrected and a warning is given
This is necessary for some edge cases of the xml schemas of fleur
:param several: bool, if True multiple tags od the given name are allowed
:raises ValueError: If the insertion failed in any way (tag_order does not match, failed to insert, ...)
:returns: xmltree with created tags
"""
import copy
from more_itertools import unique_justseen
from masci_tools.io.common_functions import is_sequence
if not etree.iselement(element):
element_name = element
try:
element = etree.Element(element)
except ValueError as exc:
raise ValueError(f"Failed to construct etree Element from '{element_name}'") from exc
else:
element_name = element.tag
parent_nodes = eval_xpath(xmltree, xpath, list_return=True)
if len(parent_nodes) == 0:
raise ValueError(f"Could not create tag '{element_name}' because atleast one subtag is missing. "
'Use create=True to create the subtags')
if occurrences is not None:
if not is_sequence(occurrences):
occurrences = [occurrences]
try:
parent_nodes = [parent_nodes[occ] for occ in occurrences]
except IndexError as exc:
raise ValueError('Wrong value for occurrences') from exc
for parent in parent_nodes:
element_to_write = copy.deepcopy(element)
if tag_order is not None:
try:
tag_index = tag_order.index(element_name)
except ValueError as exc:
raise ValueError(f"The tag '{element_name}' was not found in the order list. "
f'Allowed tags are: {tag_order}') from exc
behind_tags = tag_order[:tag_index]
child_tags = [child.tag for child in parent.iterchildren()]
#This ignores serial duplicates. With this out of order tags will be obvious e.g ['ldaU', 'lo','lo', 'ldaU']
#will result in ['ldaU', 'lo', 'ldaU']
existing_order = list(unique_justseen(child_tags))
#Does the input file have unknown tags
extra_tags = set(existing_order).difference(set(tag_order))
if extra_tags:
raise ValueError(f'Did not find existing elements in the tag_order list: {extra_tags}')
if element_name in existing_order and not several:
raise ValueError(f'The given tag {element_name} is not allowed to appear multiple times')
#Is the existing order in line with the given tag_order
if sorted(existing_order, key=tag_order.index) != existing_order:
if not correct_order:
raise ValueError('Existing order does not correspond to tag_order list\n'
f'Expected order: {tag_order}\n'
f'Actual order: {existing_order}')
else:
#Here we know that there are no unexpected tags in the order, so we can 'repair' the order
warnings.warn('Existing order does not correspond to tag_order list. Correcting it\n'
f'Expected order: {tag_order}\n'
f'Actual order: {existing_order}')
new_tag = copy.deepcopy(parent)
#Remove all child nodes from new_tag (deepcopied so they are still on parent)
for node in new_tag.iterchildren():
new_tag.remove(node)
for tag in tag_order:
#Iterate over all children with the given tag on the parent and append to the new_tag
for node in parent.iterchildren(tag=tag):
new_tag.append(node)
#Now replace the parent node with the reordered node
parent_of_parent = parent.getparent()
index = parent_of_parent.index(parent)
parent_of_parent.remove(parent)
parent_of_parent.insert(index, new_tag)
parent = new_tag
for tag in reversed(behind_tags):
existing_tags = list(parent.iterchildren(tag=tag))
if len(existing_tags) != 0:
insert_index = parent.index(existing_tags[-1]) + 1
try:
parent.insert(insert_index, element_to_write)
except ValueError as exc:
raise ValueError(f"Failed to insert element '{element_name}' behind '{tag}' tag") from exc
break
else: #This is the construct for reaching the end of the loop without breaking
try:
parent.insert(0, element_to_write)
except ValueError as exc:
raise ValueError(
f"Failed to insert element '{element_name}' at the beginning of the order") from exc
elif place_index is not None:
#We just try to insert the new element at the index
try:
parent.insert(place_index, element_to_write)
except ValueError as exc:
raise ValueError(f"Failed to create element '{element_name}' at the place index '{place_index}' "
f"to the parent '{parent.tag}'") from exc
else:
#We append the node and hope nothing breaks
try:
parent.append(element_to_write)
except ValueError as exc:
raise ValueError(f"Failed to append element '{element_name}' to the parent '{parent.tag}'") from exc
etree.indent(xmltree)
return xmltree