def format_axes(self, ax):
ax.set_ylabel(self.ylabel)
if self.yrange is not None:
ax.set_ylim(self.yrange)
if self.yunit is not None:
#print 'Setting yunit', self.yunit
ax.set_display_unit(y=self.yunit)
if self.yticks is not None:
if isinstance( self.yticks, int):
ax.set_yaxis_maxnlocator(self.yticks)
elif is_iterable(self.yticks):
#print 'yticks', self.yticks
ax.set_yticks(self.yticks)
else:
assert False
if self.show_yticklabels:
#print 'yticks', ax.get_yticks()
ylocs = [float(ytick.rescale(ax.xyUnitDisplay[1])) for ytick in ax.get_yticks()]
# This call makes sure that we only display as many deciaml places as is sensible.
yticklabels = float_list_to_string(ylocs)
ax.set_yticklabels(yticklabels, include_unit=self.show_yticklabels_with_units)
else:
ax.set_yticklabels('')
#TODO: Something funky is going on and this is not making a difference
if self.ymargin is not None:
ax.set_ymargin(self.ymargin)
def format_axes(self, ax):
ax.set_ylabel(self.ylabel)
if self.yrange is not None:
ax.set_ylim(self.yrange)
if self.yunit is not None:
# print 'Setting yunit', self.yunit
ax.set_display_unit(y=self.yunit)
if self.yticks is not None:
if isinstance(self.yticks, int):
ax.set_yaxis_maxnlocator(self.yticks)
elif is_iterable(self.yticks):
# print 'yticks', self.yticks
ax.set_yticks(self.yticks)
else:
assert False
if self.show_yticklabels:
# print 'yticks', ax.get_yticks()
ylocs = [float(ytick.rescale(ax.xyUnitDisplay[1])) for ytick in ax.get_yticks()]
# This call makes sure that we only display as many deciaml places as is sensible.
yticklabels = float_list_to_string(ylocs)
ax.set_yticklabels(yticklabels, include_unit=self.show_yticklabels_with_units)
else:
ax.set_yticklabels("")
# TODO: Something funky is going on and this is not making a difference
if self.ymargin is not None:
ax.set_ymargin(self.ymargin)
def format_axes(self, ax):
ax.set_ylabel(self.ylabel)
if self.yrange is not None:
ax.set_ylim(self.yrange)
if self.yunit is not None:
ax.set_display_unit(y=self.yunit)
if self.yticks is not None:
if isinstance( self.yticks, int):
if self.yticks==0:
ax.set_yaxis_nulllocator()
else:
ax.set_yaxis_maxnlocator(self.yticks)
elif is_iterable(self.yticks):
ax.set_yaxis_fixedlocator(self.yticks)
else:
assert False
# If we set yticks manually, then we might also set yticklabels.
if self.yticklabels is not None:
ax.set_yticklabels(self.yticklabels)
if self.yticklabels is None:
ax.set_yticklabel_mode(show_ticklabels=self.show_yticklabels, include_units=self.show_yticklabels_with_units)
#TODO: Something funky is going on and this is not making a difference
if self.ymargin is not None:
ax.set_ymargin(self.ymargin)
def __init__(
self,
srcs,
plots=None,
additional_plots=None,
figtitle=None,
fig_kwargs=None,
show=True,
linkage=None,
timerange=None,
mpl_tight_bounds=False,
share_x_labels=True,
nxticks=4,
show_xlabel='only-once',
show_xticklabels='only-once',
show_xticklabels_with_units=True,
show_xaxis_position='bottom',
xticks=None
):
"""Plot a set of traces.
Keyword arguments:
plots --
srcs --
plots --
additional_plots --
figtitle --
fig_kwargs --
show --
linkage --
timerange --
mpl_tight_bounds --
share_x_labels --
nxticks=4,
show_xlabel -- which plots should the x-axis be displayed on.
show_xticklabels --
show_xticklabels_with_units --
show_xaxis_position --
xticks --
"""
if fig_kwargs is None:
fig_kwargs = self._default_fig_kwargs
self.linkage = linkage
if not is_iterable(srcs):
srcs = [srcs]
# For each type of input (in 'srcs'); this should return a list of traces:
self.all_trace_objs = []
self.all_event_set_objs = []
trace_extractors = {
SimulationResult: lambda obj: self.all_trace_objs.extend(obj.traces),
TraceFixedDT: lambda obj: self.all_trace_objs.append(obj),
TraceVariableDT: lambda obj: self.all_trace_objs.append(obj),
TracePiecewise: lambda obj: self.all_trace_objs.append(obj),
EventSet: lambda obj: self.all_event_set_objs.append(obj)
}
for obj in srcs:
tr_extractor = trace_extractors[type(obj)]
tr_extractor(obj)
# Use the new PlotSpec architecture:
# Filter out which plots are actually going to display something,
# and filter out the rest:
plots = plots if plots is not None else TagViewer._default_plot_specs
if additional_plots:
plots = tuple(list(plots) + list(additional_plots))
self.plot_specs = [plotspec for plotspec in plots if
[tr for tr in self.all_trace_objs if plotspec.addtrace_predicate(tr)] or \
[evset for evset in self.all_event_set_objs if plotspec.addeventset_predicate(evset)] \
]
self.fig_kwargs = fig_kwargs
self.figtitle = figtitle
self.mpl_tight_bounds = mpl_tight_bounds
self.timerange = timerange
self.share_x_labels = share_x_labels
self.nxticks = nxticks
# X-axis configuration:
self.show_xlabel = show_xlabel
self.show_xticklabels = show_xticklabels
self.show_xticklabels_with_units = show_xticklabels_with_units
self.show_xaxis_position = show_xaxis_position
self.xticks=xticks
assert self.show_xlabel in self._options_show_xlabel, 'Invalid'
assert self.show_xticklabels in self._options_show_xticklabels
assert self.show_xticklabels_with_units in self._options_show_xticklabels_with_units
assert self.show_xaxis_position in self._options_show_xaxis_position
if is_iterable( self.xticks ) and all( [isinstance(xtick, (int, float)) for xtick in self.xticks]):
self.xticks = [ xtick*pq.ms for xtick in self.xticks]
assert self.xticks is None or isinstance(self.xticks, int) or ( is_iterable(self.xticks) and [ unit(xtick) for xtick in self.xticks] )
self.fig = None
self.subaxes = []
self.create_figure()
if TagViewer.MPL_AUTO_SHOW and show:
import pylab
pylab.show()
def __init__(self,
srcs,
plots=None,
additional_plots=None,
figtitle=None,
fig_kwargs=None,
show=True,
linkage=None,
timerange=None,
mpl_tight_bounds=False,
share_x_labels=True,
nxticks=4,
show_xlabel='only-once',
show_xticklabels='only-once',
show_xticklabels_with_units=True,
show_xaxis_position='bottom',
xticks=None):
"""Plot a set of traces.
Keyword arguments:
plots --
srcs --
plots --
additional_plots --
figtitle --
fig_kwargs --
show --
linkage --
timerange --
mpl_tight_bounds --
share_x_labels --
nxticks=4,
show_xlabel -- which plots should the x-axis be displayed on.
show_xticklabels --
show_xticklabels_with_units --
show_xaxis_position --
xticks --
"""
if fig_kwargs is None:
fig_kwargs = self._default_fig_kwargs
self.linkage = linkage
if not is_iterable(srcs):
srcs = [srcs]
# For each type of input (in 'srcs'); this should return a list of traces:
self.all_trace_objs = []
self.all_event_set_objs = []
trace_extractors = {
SimulationResult:
lambda obj: self.all_trace_objs.extend(obj.traces),
TraceFixedDT: lambda obj: self.all_trace_objs.append(obj),
TraceVariableDT: lambda obj: self.all_trace_objs.append(obj),
TracePiecewise: lambda obj: self.all_trace_objs.append(obj),
EventSet: lambda obj: self.all_event_set_objs.append(obj)
}
for obj in srcs:
tr_extractor = trace_extractors[type(obj)]
tr_extractor(obj)
# Use the new PlotSpec architecture:
# Filter out which plots are actually going to display something,
# and filter out the rest:
plots = plots if plots is not None else TagViewer._default_plot_specs
if additional_plots:
plots = tuple(list(plots) + list(additional_plots))
self.plot_specs = [plotspec for plotspec in plots if
[tr for tr in self.all_trace_objs if plotspec.addtrace_predicate(tr)] or \
[evset for evset in self.all_event_set_objs if plotspec.addeventset_predicate(evset)] \
]
self.fig_kwargs = fig_kwargs
self.figtitle = figtitle
self.mpl_tight_bounds = mpl_tight_bounds
self.timerange = timerange
self.share_x_labels = share_x_labels
self.nxticks = nxticks
# X-axis configuration:
self.show_xlabel = show_xlabel
self.show_xticklabels = show_xticklabels
self.show_xticklabels_with_units = show_xticklabels_with_units
self.show_xaxis_position = show_xaxis_position
self.xticks = xticks
assert self.show_xlabel in self._options_show_xlabel, 'Invalid'
assert self.show_xticklabels in self._options_show_xticklabels
assert self.show_xticklabels_with_units in self._options_show_xticklabels_with_units
assert self.show_xaxis_position in self._options_show_xaxis_position
if is_iterable(self.xticks) and all(
[isinstance(xtick, (int, float)) for xtick in self.xticks]):
self.xticks = [xtick * pq.ms for xtick in self.xticks]
assert self.xticks is None or isinstance(
self.xticks, int) or (is_iterable(self.xticks)
and [unit(xtick) for xtick in self.xticks])
self.fig = None
self.subaxes = []
self.create_figure()
if TagViewer.MPL_AUTO_SHOW and show:
import pylab
pylab.show()