def __init__(self):
super(IntraAnalysisTestCase, self).__init__()
self.output_directory = os.path.join('/neurospin', 'tmp',
'cati-dev-prod', 'morphologist',
'output_dirs', getpass.getuser(),
IntraAnalysis.get_default_parameter_template_name())
reset_directory(self.output_directory)
def __init__(self):
super(IntraAnalysisTestCase, self).__init__()
test_dir = os.environ.get("BRAINVISA_TESTS_DIR")
if not test_dir:
raise RuntimeError("BRAINVISA_TESTS_DIR is not set")
test_dir = os.path.join(test_dir, "tmp_tests_brainvisa")
self.output_directory = os.path.join(test_dir, "morphologist-ui", "brainvisa")
reset_directory(self.output_directory)
def __init__(self):
super(MockStudyTestCase, self).__init__()
self.analysis_type = "MockAnalysis"
self.studyname = 'mock_study'
self.output_directory = '/tmp/morphologist_output_mock_study_test_case'
self.subjectnames = ['bla', 'blabla', 'blablabla']
self.filenames = ['/tmp/morphologist_output_mock_study_test_case/foo'] * len(self.subjectnames)
self.groupnames = [Subject.DEFAULT_GROUP] * len(self.subjectnames)
reset_directory(self.output_directory)
def __init__(self):
super(IntraAnalysisTestCase, self).__init__()
tests_dir = os.getenv("BRAINVISA_TEST_RUN_DATA_DIR")
if not tests_dir:
raise RuntimeError('BRAINVISA_TEST_RUN_DATA_DIR is not set')
tests_dir = os.path.join(tests_dir, 'tmp_tests_brainvisa')
self.output_directory = os.path.join(tests_dir, 'morphologist-ui',
'brainvisa')
reset_directory(self.output_directory)
def __init__(self):
super(MockAnalysisTestCase, self).__init__()
test_dir = os.environ.get('BRAINVISA_TESTS_DIR')
if not test_dir:
raise RuntimeError('BRAINVISA_TESTS_DIR is not set')
self.output_directory = os.path.join(
test_dir,
'tmp_tests_brainvisa/morphologist-ui/'
'mock_analysis_test_case_output_directory')
reset_directory(self.output_directory)
def __init__(self):
super(MockStudyTestCase, self).__init__()
self.analysis_type = "MockAnalysis"
self.studyname = 'mock_study'
test_dir = os.environ.get('BRAINVISA_TESTS_DIR')
if not test_dir:
raise RuntimeError('BRAINVISA_TESTS_DIR is not set')
self.output_directory = os.path.join(
test_dir,
'tmp_tests_brainvisa/morphologist_output_mock_study_test_case')
self.subjectnames = ['bla', 'blabla', 'blablabla']
self.filenames = [os.path.join(self.output_directory, 'foo')] \
* len(self.subjectnames)
self.groupnames = [Subject.DEFAULT_GROUP] * len(self.subjectnames)
reset_directory(self.output_directory)
def __init__(self):
super(IntraAnalysisStudyTestCase, self).__init__()
self.analysis_type = "IntraAnalysis"
self.studyname = "study with param template: " + self.parameter_template_name()
self.output_directory = os.path.join('/neurospin', 'tmp',
'cati-dev-prod', 'morphologist',
'output_dirs', getpass.getuser(),
self.parameter_template_name())
inputdir = os.path.join('/neurospin', 'lnao', 'Panabase',
'cati-dev-prod', 'morphologist', 'raw_irm')
basenames = ['caca.ima', 'chaos.nii.gz',
'dionysos2.ima', 'hyperion.nii']
self.filenames = [os.path.join(inputdir, filename) for filename in basenames]
self.subjectnames = ['caca', 'chaos', 'dionysos2', 'hyperion']
self.groupnames = ['group 1', 'group 2', 'group 3', 'group 4']
reset_directory(self.output_directory)
def __init__(self):
super(IntraAnalysisStudyTestCase, self).__init__()
self.analysis_type = "IntraAnalysis"
self.studyname = "study with param template: " + self.parameter_template_name()
test_dir = os.environ.get('BRAINVISA_TESTS_DIR')
if not test_dir:
raise RuntimeError('BRAINVISA_TESTS_DIR is not set')
test_dir = os.path.join(test_dir, 'tmp_tests_brainvisa')
self.output_directory = os.path.join(test_dir, 'morphologist-ui',
self.parameter_template_name())
inputdir = os.path.join(test_dir, 'data_unprocessed')
basenames = ['sujet01.ima', 'sujet02.ima', 'sujet03.ima']
self.subjectnames = [filename.split('.')[0] for filename in basenames]
self.filenames = [os.path.join(inputdir, subject, 'anatomy', filename)
for filename, subject
in zip(basenames, self.subjectnames)]
self.groupnames = ['group 1', 'group 2', 'group 3']
reset_directory(self.output_directory)
def __init__(self):
super(MockAnalysisTestCase, self).__init__()
self.output_directory = os.path.join('/tmp', 'mock_analysis_test_case_output_directory')
reset_directory(self.output_directory)