def testLoadMap(): from_ = u"data/SHORT_MS2_FILE.mzXML" ds = ms.loadPeakMap(from_) assert osp.basename(ds.meta.get("source")) == osp.basename(from_) # with unicode ms.storePeakMap(ds, u"temp_output/utilstest.mzML") ds2 = ms.loadPeakMap(u"temp_output/utilstest.mzML") assert len(ds) == len(ds2) # without unicode ms.storePeakMap(ds2, "temp_output/utilstest.mzData") ds3 = ms.loadPeakMap("temp_output/utilstest.mzData") assert len(ds) == len(ds3)
def testLoadMap(): from_ = u"data/SHORT_MS2_FILE.mzXML" ds = ms.loadPeakMap(from_) assert osp.basename(ds.meta.get("source")) == osp.basename(from_) # with unicode ms.storePeakMap(ds, u"temp_output/utilstest.mzML") ds2 = ms.loadPeakMap(u"temp_output/utilstest.mzML") assert len(ds)==len(ds2) # without unicode ms.storePeakMap(ds2, "temp_output/utilstest.mzData") ds3 = ms.loadPeakMap("temp_output/utilstest.mzData") assert len(ds)==len(ds3)
def write(self, result, destinationDir, path): basename, ext = os.path.splitext(os.path.basename(path)) savePath = os.path.join(destinationDir, basename + "_centroided.mzML") print "save to ", savePath ms.storePeakMap(result, savePath)
def write(self, result, destinationDir, path): basename, ext = os.path.splitext(os.path.basename(path)) savePath = os.path.join(destinationDir, basename+"_centroided.mzML") print "save to ", savePath ms.storePeakMap(result, savePath)