def test_merge_alleles(self):
self.args.merge_alleles = 'test/munge_test/merge_alleles'
x = munge.munge_sumstats(self.args, p=False)
correct = pd.read_csv('test/munge_test/correct_merge.sumstats',
delim_whitespace=True,
header=0)
assert_frame_equal(x, correct)
def test_basic(self):
x = munge.munge_sumstats(self.args, p=False)
correct = pd.read_csv('test/munge_test/correct.sumstats',
delim_whitespace=True,
header=0)
assert_frame_equal(x, correct)
def test_basic(self):
x = munge.munge_sumstats(self.args, p=False)
correct = pd.read_csv(
'test/munge_test/correct.sumstats', delim_whitespace=True, header=0)
assert_frame_equal(x, correct)
def test_merge_alleles(self):
self.args.merge_alleles = 'test/munge_test/merge_alleles'
x = munge.munge_sumstats(self.args, p=False)
correct = pd.read_csv(
'test/munge_test/correct_merge.sumstats', delim_whitespace=True, header=0)
assert_frame_equal(x, correct)
def test_merge_alleles(self):
self.args.merge_alleles = os.path.join(MUNGE_TEST_FILES_DIR, 'merge_alleles')
x = munge.munge_sumstats(self.args, p=False)
correct = pd.read_csv(
os.path.join(MUNGE_TEST_FILES_DIR, 'correct_merge.sumstats'), delim_whitespace=True, header=0)
assert_frame_equal(x, correct)