Python split_chr_loc示例

示例#1

 def testSplitChrLoc(self):
     """
     Tests spliting the chr_loc from chr1:1-100 to 1, 1, 100
     Returns strings, not integers
     """
     result01 = ann.split_chr_loc('chr1:1-100 ')
     result02 = ann.split_chr_loc('1:1-100')
     self.assertEquals(result01, ('1', '1', '100'))
     self.assertEquals(result02, ('1', '1', '100'))

示例#2

 def testSplitChrLoc(self):
     """
     Tests spliting the chr_loc from chr1:1-100 to 1, 1, 100
     Returns strings, not integers
     """
     result01=split_chr_loc('chr1:1-100')
     result02=split_chr_loc('1:1-100')
     self.assertEquals(result01, ('1','1','100'))
     self.assertEquals(result02, ('1','1','100'))

示例#3

文件： variant_crawler.py 项目： sheenams/munge

def get_info(fname):
    """
    Function to get information from csv file and create dictionary to write output file
    """
    reader = csv.DictReader(fname, delimiter='\t')
    for d in reader:
         d.update()
         try:
             d['chromosome'], d['start'], d['end']=split_chr_loc(d['chr_loc'])
         except KeyError:
             print 'Key not found', fname
             continue
         yield d

示例#4

def get_info(fname):
    """
    Function to get information from csv file and create dictionary to write output file
    """
    reader = csv.DictReader(fname, delimiter='\t')
    for d in reader:
        d.update()
        try:
            d['chromosome'], d['start'], d['end'] = split_chr_loc(d['chr_loc'])
        except KeyError:
            print 'Key not found', fname
            continue
        yield d