def __init__(self, config, sampleIdentifier, regions, splitFilesChunks=1, chunkNumber=1, splitFilesChunkSize=-1, forceRedo=False, fileList=None):
self.config = config
self.sampleIdentifier = sampleIdentifier
self.regions = list(set(regions))
self.forceRedo = forceRedo
self.sampleTree = None
self.samplesPath = self.config.get('Directories', 'plottingSamples')
self.samplesDefinitions = self.config.get('Directories','samplesinfo')
self.samplesInfo = ParseInfo(self.samplesDefinitions, self.samplesPath)
self.sampleFilesFolder = self.config.get('Directories', 'samplefiles')
self.sampleNames = eval(self.config.get('Plot_general', 'samples'))
self.dataNames = eval(self.config.get('Plot_general', 'Data'))
self.samples = self.samplesInfo.get_samples(self.sampleNames + self.dataNames)
self.regionsDict = {}
for region in self.regions:
treeCut = config.get('Cuts', region)
self.regionsDict[region] = {'cut': treeCut}
self.splitFilesChunkSize = splitFilesChunkSize
self.splitFilesChunks = splitFilesChunks
self.chunkNumber = chunkNumber
self.fileList = FileList.decompress(fileList) if fileList else None
VHbbNameSpace=config.get('VHbbNameSpace','library')
returnCode = ROOT.gSystem.Load(VHbbNameSpace)
if returnCode != 0:
print ("\x1b[31mERROR: loading VHbbNameSpace failed with code %d\x1b[0m"%returnCode)
else:
print ("INFO: loaded VHbbNameSpace: %s"%VHbbNameSpace)
def __init__(self,
config,
regions,
sampleToCache,
splitFilesChunks=1,
chunkNumber=1,
splitFilesChunkSize=-1,
forceRedo=False,
fileList=None,
verbose=False):
self.verbose = verbose or ('XBBDEBUG' in os.environ)
self.config = config
self.regions = regions
self.treeCaches = []
self.sampleTree = None
self.sampleToCache = sampleToCache
self.forceRedo = forceRedo
# settings which part of input files to process
self.splitFilesChunkSize = splitFilesChunkSize
self.splitFilesChunks = splitFilesChunks
self.chunkNumber = chunkNumber
self.fileList = FileList.decompress(fileList) if fileList else None
# initialize Datacard objects
self.dcMakers = [
Datacard(config=self.config, region=region)
for region in self.regions
]
def __init__(self, config, regions, sampleToCache, splitFilesChunks=1, chunkNumber=1, splitFilesChunkSize=-1, forceRedo=False, fileList=None, verbose=False):
self.verbose = verbose
self.config = config
self.regions = regions
self.treeCaches = []
self.sampleTree = None
self.sampleToCache = sampleToCache
self.forceRedo = forceRedo
# settings which part of input files to process
self.splitFilesChunkSize = splitFilesChunkSize
self.splitFilesChunks = splitFilesChunks
self.chunkNumber = chunkNumber
self.fileList = FileList.decompress(fileList) if fileList else None
# initialize Datacard objects
self.dcMakers = [Datacard(config=self.config, region=region) for region in self.regions]
def __init__(self,
config,
sampleIdentifier,
regions,
splitFilesChunks=1,
chunkNumber=1,
splitFilesChunkSize=-1,
forceRedo=False,
fileList=None):
self.config = config
self.sampleIdentifier = sampleIdentifier
self.regions = list(set(regions))
self.forceRedo = forceRedo
self.sampleTree = None
self.samplesPath = self.config.get('Directories', 'plottingSamples')
self.samplesInfo = ParseInfo(samples_path=self.samplesPath,
config=self.config)
self.sampleFilesFolder = self.config.get('Directories', 'samplefiles')
self.sampleNames = list(
eval(self.config.get('Plot_general', 'samples')))
self.dataNames = list(eval(self.config.get('Plot_general', 'Data')))
self.samples = self.samplesInfo.get_samples(self.sampleNames +
self.dataNames)
self.regionsDict = {}
for region in self.regions:
treeCut = config.get('Cuts', region)
self.regionsDict[region] = {'cut': treeCut}
self.splitFilesChunkSize = splitFilesChunkSize
self.splitFilesChunks = splitFilesChunks
self.chunkNumber = chunkNumber
self.fileList = FileList.decompress(fileList) if fileList else None
VHbbNameSpace = config.get('VHbbNameSpace', 'library')
returnCode = ROOT.gSystem.Load(VHbbNameSpace)
if returnCode != 0:
print(
"\x1b[31mERROR: loading VHbbNameSpace failed with code %d\x1b[0m"
% returnCode)
else:
print("INFO: loaded VHbbNameSpace: %s" % VHbbNameSpace)
argv = sys.argv
parser = OptionParser()
parser.add_option("-S", "--sampleIdentifier", dest="sampleIdentifier", default="",
help="samples you want to run on")
parser.add_option("-C", "--config", dest="config", default=[], action="append",
help="configuration defining the plots to make")
parser.add_option("-f", "--fileList", dest="fileList", default="",
help="list of files you want to run on")
parser.add_option("-b", "--addCollections", dest="addCollections", default="",
help="collections to add: vtype")
parser.add_option("-F", "--force", dest="force", action="store_true", help="overwrite existing files", default=False)
(opts, args) = parser.parse_args(argv)
if opts.config == "":
opts.config = "config"
filelist = FileList.decompress(opts.fileList) if len(opts.fileList) > 0 else None
print "len(filelist)",len(filelist),
if len(filelist) > 0:
print "filelist[0]:", filelist[0]
else:
print ''
debug = 'XBBDEBUG' in os.environ
config = BetterConfigParser()
config.read(opts.config)
anaTag = config.get("Analysis","tag")
TrainFlag = eval(config.get('Analysis','TrainFlag'))
btagLibrary = config.get('BTagReshaping','library')
samplesinfo=config.get('Directories','samplesinfo')
channel=config.get('Configuration','channel')
VHbbNameSpace=config.get('VHbbNameSpace','library')
argv = sys.argv
parser = OptionParser()
parser.add_option("-S", "--sampleIdentifier", dest="sampleIdentifier", default="",
help="samples you want to run on")
parser.add_option("-C", "--config", dest="config", default=[], action="append",
help="configuration defining the plots to make")
parser.add_option("-f", "--fileList", dest="fileList", default="",
help="list of files you want to run on")
parser.add_option("-b", "--addCollections", dest="addCollections", default="",
help="collections to add: vtype")
parser.add_option("-F", "--force", dest="force", action="store_true", help="overwrite existing files", default=False)
(opts, args) = parser.parse_args(argv)
if opts.config == "":
opts.config = "config"
filelist = FileList.decompress(opts.fileList) if len(opts.fileList) > 0 else None
print "len(filelist)",len(filelist),
if len(filelist) > 0:
print "filelist[0]:", filelist[0]
else:
print ''
debug = 'XBBDEBUG' in os.environ
config = BetterConfigParser()
config.read(opts.config)
anaTag = config.get("Analysis","tag")
TrainFlag = eval(config.get('Analysis','TrainFlag'))
btagLibrary = config.get('BTagReshaping','library')
samplesinfo=config.get('Directories','samplesinfo')
channel=config.get('Configuration','channel')
VHbbNameSpace=config.get('VHbbNameSpace','library')
# read arguments
argv = sys.argv
parser = OptionParser()
parser.add_option("-v", "--verbose", action="store_true", dest="verbose", default=False,
help="Verbose mode.")
parser.add_option("-C", "--config", dest="config", default=[], action="append",
help="configuration file")
parser.add_option("-s","--sampleIdentifier", dest="sampleIdentifier", default='',
help="sample identifier (no subsample!)")
parser.add_option("-i","--chunkNumber", dest="chunkNumber", default='',
help="number of part to cache")
parser.add_option("-f","--force", action="store_true", dest="force", default=False,
help="force overwriting of already cached files")
parser.add_option("-l","--fileList", dest="fileList", default="",
help="file list")
(opts, args) = parser.parse_args(argv)
if opts.config == "":
opts.config = "config"
# Import after configure to get help message
from myutils import BetterConfigParser, mvainfo, ParseInfo
# load config
config = BetterConfigParser()
config.read(opts.config)
partialFileMerger = PartialFileMerger(FileList.decompress(opts.fileList), int(opts.chunkNumber), config=config, sampleIdentifier=opts.sampleIdentifier, force=opts.force)
partialFileMerger.run()
def __init__(self, opts):
# get file list
self.filelist = FileList.decompress(opts.fileList) if len(opts.fileList) > 0 else None
print "len(filelist)",len(self.filelist),
if len(self.filelist) > 0:
print "filelist[0]:", self.filelist[0]
else:
print ''
# config
self.debug = 'XBBDEBUG' in os.environ
self.verifyCopy = True
self.opts = opts
self.config = BetterConfigParser()
self.config.read(opts.config)
samplesinfo = self.config.get('Directories', 'samplesinfo')
self.channel = self.config.get('Configuration', 'channel')
# load namespace, TODO
VHbbNameSpace = self.config.get('VHbbNameSpace', 'library')
ROOT.gSystem.Load(VHbbNameSpace)
# directories
self.pathIN = self.config.get('Directories', opts.inputDir)
self.pathOUT = self.config.get('Directories', opts.outputDir)
self.tmpDir = self.config.get('Directories', 'scratch')
print 'INput samples:\t%s'%self.pathIN
print 'OUTput samples:\t%s'%self.pathOUT
self.fileLocator = FileLocator(config=self.config)
# check if given sample identifier uniquely matches a samples from config
matchingSamples = ParseInfo(samplesinfo, self.pathIN).find(identifier=opts.sampleIdentifier)
if len(matchingSamples) != 1:
print "ERROR: need exactly 1 sample identifier as input with -S !!"
print matchingSamples
exit(1)
self.sample = matchingSamples[0]
# collections
self.collections = [x.strip() for x in opts.addCollections.split(',') if len(x.strip()) > 0] if len(opts.addCollections.strip())>0 else []
if len(self.collections) < 1:
print "\x1b[31mWARNING: no collections added! Specify the collections to add with the --addCollections option!\x1b[0m"
print 'collections to add:', self.collections
self.collections = self.parseCollectionList(self.collections)
print 'after parsing:', self.collections
# temorary folder to save the files of this job on the scratch
temporaryName = self.sample.identifier + '/' + uuid.uuid4().hex
# input files
self.subJobs = []
if opts.join:
print("INFO: join input files! This is an experimental feature!")
# translate naming convention of .txt file to imported files after the prep step
inputFileNamesAfterPrep = [self.fileLocator.getFilenameAfterPrep(x) for x in self.filelist]
self.subJobs.append({
'inputFileNames': self.filelist,
'localInputFileNames': ["{path}/{subfolder}/{filename}".format(path=self.pathIN, subfolder=self.sample.identifier, filename=localFileName) for localFileName in inputFileNamesAfterPrep],
'outputFileName': "{path}/{subfolder}/{filename}".format(path=self.pathOUT, subfolder=self.sample.identifier, filename=inputFileNamesAfterPrep[0]),
'tmpFileName': "{path}/{subfolder}/{filename}".format(path=self.tmpDir, subfolder=temporaryName, filename=inputFileNamesAfterPrep[0]),
})
else:
# create separate subjob for all files (default!)
for inputFileName in self.filelist:
inputFileNamesAfterPrep = [self.fileLocator.getFilenameAfterPrep(inputFileName)]
self.subJobs.append({
'inputFileNames': [inputFileName],
'localInputFileNames': ["{path}/{subfolder}/{filename}".format(path=self.pathIN, subfolder=self.sample.identifier, filename=localFileName) for localFileName in inputFileNamesAfterPrep],
'outputFileName': "{path}/{subfolder}/{filename}".format(path=self.pathOUT, subfolder=self.sample.identifier, filename=inputFileNamesAfterPrep[0]),
'tmpFileName': "{path}/{subfolder}/{filename}".format(path=self.tmpDir, subfolder=temporaryName, filename=inputFileNamesAfterPrep[0]),
})
def test_FileListDamaged2(self):
compressedFileList = FileList.compress(self.fileList)
# corrupt the file list
compressedFileList = 'H'+compressedFileList[1:]
with self.assertRaises(Exception) as e:
decompressedFileList = FileList.decompress(compressedFileList)
def test_FileListDamaged(self):
compressedFileList = FileList.compress(self.fileList)
# corrupt the file list by removing the last character
compressedFileList = compressedFileList[:-1]
with self.assertRaises(Exception) as e:
decompressedFileList = FileList.decompress(compressedFileList)
def test_FileList(self):
compressedFileList = FileList.compress(self.fileList)
decompressedFileList = FileList.decompress(compressedFileList)
print('uncompressed length:',len(';'.join(self.fileList)))
print('compressed length:',len(compressedFileList))
self.assertEqual(self.fileList, decompressedFileList)
def test_FileListEmpty(self):
print('empty:', FileList.compress([]))
# corrupt the file list
compressedFileList = 'base64:'
with self.assertRaises(Exception) as e:
decompressedFileList = FileList.decompress(compressedFileList)
def test_FileListDamaged2(self):
compressedFileList = FileList.compress(self.fileList)
# corrupt the file list
compressedFileList = 'H' + compressedFileList[1:]
with self.assertRaises(Exception) as e:
decompressedFileList = FileList.decompress(compressedFileList)
def test_FileListDamaged(self):
compressedFileList = FileList.compress(self.fileList)
# corrupt the file list by removing the last character
compressedFileList = compressedFileList[:-1]
with self.assertRaises(Exception) as e:
decompressedFileList = FileList.decompress(compressedFileList)
def test_FileList(self):
compressedFileList = FileList.compress(self.fileList)
decompressedFileList = FileList.decompress(compressedFileList)
print('uncompressed length:', len(';'.join(self.fileList)))
print('compressed length:', len(compressedFileList))
self.assertEqual(self.fileList, decompressedFileList)
help="number of part to cache")
parser.add_option("-f",
"--force",
action="store_true",
dest="force",
default=False,
help="force overwriting of already cached files")
parser.add_option("-l",
"--fileList",
dest="fileList",
default="",
help="file list")
(opts, args) = parser.parse_args(argv)
if opts.config == "":
opts.config = "config"
# Import after configure to get help message
from myutils import BetterConfigParser, mvainfo, ParseInfo
# load config
config = BetterConfigParser()
config.read(opts.config)
partialFileMerger = PartialFileMerger(
FileList.decompress(opts.fileList),
int(opts.chunkNumber),
config=config,
sampleIdentifier=opts.sampleIdentifier,
force=opts.force)
partialFileMerger.run()
def __init__(self, opts):
# get file list
self.filelist = FileList.decompress(opts.fileList) if len(opts.fileList) > 0 else None
print "len(filelist)",len(self.filelist),
if len(self.filelist) > 0:
print "filelist[0]:", self.filelist[0]
else:
print ''
# config
self.debug = 'XBBDEBUG' in os.environ
self.verifyCopy = True
self.opts = opts
self.config = BetterConfigParser()
self.config.read(opts.config)
self.channel = self.config.get('Configuration', 'channel')
# load namespace, TODO
VHbbNameSpace = self.config.get('VHbbNameSpace', 'library')
ROOT.gSystem.Load(VHbbNameSpace)
# directories
self.pathIN = self.config.get('Directories', opts.inputDir)
self.pathOUT = self.config.get('Directories', opts.outputDir)
self.tmpDir = self.config.get('Directories', 'scratch')
print 'INput samples:\t%s'%self.pathIN
print 'OUTput samples:\t%s'%self.pathOUT
self.fileLocator = FileLocator(config=self.config)
# check if given sample identifier uniquely matches a samples from config
matchingSamples = ParseInfo(samples_path=self.pathIN, config=self.config).find(identifier=opts.sampleIdentifier)
if len(matchingSamples) != 1:
print "ERROR: need exactly 1 sample identifier as input with -S !!"
print matchingSamples
exit(1)
self.sample = matchingSamples[0]
# collections
self.collections = [x.strip() for x in opts.addCollections.split(',') if len(x.strip()) > 0] if len(opts.addCollections.strip())>0 else []
if len(self.collections) < 1:
print "\x1b[31mWARNING: no collections added! Specify the collections to add with the --addCollections option!\x1b[0m"
print 'collections to add:', self.collections
self.collections = self.parseCollectionList(self.collections)
print 'after parsing:', self.collections
# temorary folder to save the files of this job on the scratch
temporaryName = self.sample.identifier + '/' + uuid.uuid4().hex
# input files
self.subJobs = []
if opts.join:
print("INFO: join input files! This is an experimental feature!")
# translate naming convention of .txt file to imported files after the prep step
inputFileNamesAfterPrep = [self.fileLocator.getFilenameAfterPrep(x) for x in self.filelist]
self.subJobs.append({
'inputFileNames': self.filelist,
'localInputFileNames': ["{path}/{subfolder}/{filename}".format(path=self.pathIN, subfolder=self.sample.identifier, filename=localFileName) for localFileName in inputFileNamesAfterPrep],
'outputFileName': "{path}/{subfolder}/{filename}".format(path=self.pathOUT, subfolder=self.sample.identifier, filename=inputFileNamesAfterPrep[0]),
'tmpFileName': "{path}/{subfolder}/{filename}".format(path=self.tmpDir, subfolder=temporaryName, filename=inputFileNamesAfterPrep[0]),
})
else:
# create separate subjob for all files (default!)
for inputFileName in self.filelist:
inputFileNamesAfterPrep = [self.fileLocator.getFilenameAfterPrep(inputFileName)]
self.subJobs.append({
'inputFileNames': [inputFileName],
'localInputFileNames': ["{path}/{subfolder}/{filename}".format(path=self.pathIN, subfolder=self.sample.identifier, filename=localFileName) for localFileName in inputFileNamesAfterPrep],
'outputFileName': "{path}/{subfolder}/{filename}".format(path=self.pathOUT, subfolder=self.sample.identifier, filename=inputFileNamesAfterPrep[0]),
'tmpFileName': "{path}/{subfolder}/{filename}".format(path=self.tmpDir, subfolder=temporaryName, filename=inputFileNamesAfterPrep[0]),
})
def test_FileListEmpty(self):
print('empty:',FileList.compress([]))
# corrupt the file list
compressedFileList = 'base64:'
with self.assertRaises(Exception) as e:
decompressedFileList = FileList.decompress(compressedFileList)
