Python argument_parser示例

示例#1

文件： test_arguments.py 项目： zhimenggan/ncbi-genome-download

def test_relation_to_type_material():
    """Test the -M/--type-material option works as expected."""
    # Empty args should default to 'all'
    args = ['bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args)
    assert ns.type_material == 'any'

    args = ['-M', 'type', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args)
    assert ns.type_material == 'type'

    args = ['-M', 'type,synonym', 'fungi']
    parser = argument_parser()
    ns = parser.parse_args(args)
    assert ns.type_material == 'type,synonym'

    args = ['--type-material', 'reference', 'fungi']
    parser = argument_parser()
    ns = parser.parse_args(args)
    assert ns.type_material == 'reference'

    args = ['-M', 'all', 'fungi']
    parser = argument_parser()
    ns = parser.parse_args(args)
    assert ns.type_material == 'all'

示例#2

文件： test_arguments.py 项目： kblin/ncbi-genome-download

def test_relation_to_type_material():
  """Test the -M/--type-material option works as expected."""
  # Empty args should default to 'all'
  args = ['bacteria']
  parser = argument_parser()
  ns = parser.parse_args(args)
  assert ns.type_material == 'any'

  args = ['-M', 'type', 'bacteria']
  parser = argument_parser()
  ns = parser.parse_args(args)
  assert ns.type_material == 'type'

  args = ['-M', 'type,synonym', 'fungi']
  parser = argument_parser()
  ns = parser.parse_args(args)
  assert ns.type_material == 'type,synonym'

  args = ['--type-material', 'reference', 'fungi']
  parser = argument_parser()
  ns = parser.parse_args(args)
  assert ns.type_material == 'reference'

  args = ['-M', 'all', 'fungi']
  parser = argument_parser()
  ns = parser.parse_args(args)
  assert ns.type_material == 'all'

示例#3

def test_assembly_accessions():
    """Test the -A/--assembly-accessions option works as ecpected."""
    args = ['-A', 'GCF_000203835.1', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_accessions == 'GCF_000203835.1'

    args = ['--assembly-accessions', 'GCF_000203835.1,GCF_000444875.1', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_accessions == 'GCF_000203835.1,GCF_000444875.1'

    args = ['--assembly-accessions', 'some/path/here.txt', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_accessions == 'some/path/here.txt'

示例#4

def test_formats():
    """Test the -F/--format option works as expected."""
    args = ['-F', 'genbank', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.file_format == 'genbank'

    args = ['--format', 'fasta', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.file_format == 'fasta'

    args = ['--format', 'genbank,fasta', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.file_format == 'genbank,fasta'

示例#5

def test_assembly_levels():
    """Test the -l/--assembly-level option works as expected."""
    args = ['-l', 'complete', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_level == 'complete'

    args = ['--assembly-level', 'chromosome', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_level == 'chromosome'

    args = ['--assembly-level', 'complete,chromosome', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_level == 'complete,chromosome'

示例#6

文件： test_arguments.py 项目： kblin/ncbi-genome-download

def test_assembly_accessions():
    """Test the -A/--assembly-accessions option works as ecpected."""
    args = ['-A', 'GCF_000203835.1', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_accessions == 'GCF_000203835.1'

    args = ['--assembly-accessions', 'GCF_000203835.1,GCF_000444875.1', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_accessions == 'GCF_000203835.1,GCF_000444875.1'

    args = ['--assembly-accessions', 'some/path/here.txt', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_accessions == 'some/path/here.txt'

示例#7

文件： test_arguments.py 项目： kblin/ncbi-genome-download

def test_formats():
    """Test the -F/--format option works as expected."""
    args = ['-F', 'genbank', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.file_format == 'genbank'

    args = ['--format', 'fasta', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.file_format == 'fasta'

    args = ['--format', 'genbank,fasta', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.file_format == 'genbank,fasta'

示例#8

文件： test_arguments.py 项目： kblin/ncbi-genome-download

def test_assembly_levels():
    """Test the -l/--assembly-level option works as expected."""
    args = ['-l', 'complete', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_level == 'complete'

    args = ['--assembly-level', 'chromosome', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_level == 'chromosome'

    args = ['--assembly-level', 'complete,chromosome', 'bacteria']
    parser = argument_parser()
    ns = parser.parse_args(args=args)
    assert ns.assembly_level == 'complete,chromosome'