Python create_readable_dir示例

示例#1

文件： test_core.py 项目： mbourqui/ncbi-genome-download

def test_create_readable_dir_virus(tmpdir):
    output = tmpdir.mkdir('output')
    entry = {'organism_name': 'OnlyOneString-1', 'infraspecific_name': 'strain=ABC 1234'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'OnlyOneString-1', 'ABC_1234')
    assert expected.check()
    assert ret == str(expected)

    entry = {'organism_name': 'Two strings', 'infraspecific_name': 'strain=ABC 1234'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'Two_strings', 'ABC_1234')
    assert expected.check()
    assert ret == str(expected)

    entry = {'organism_name': 'This is four strings', 'infraspecific_name': 'strain=ABC 1234'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'This_is_four_strings', 'ABC_1234')
    assert expected.check()
    assert ret == str(expected)

    entry = {'organism_name': 'This is four strings', 'infraspecific_name': '',
             'isolate': '', 'assembly_accession': 'ABC12345'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'This_is_four_strings', 'ABC12345')
    assert expected.check()
    assert ret == str(expected)

示例#2

文件： test_core.py 项目： mbourqui/ncbi-genome-download

def test_create_readable_dir_isfile(tmpdir):
    entry = {'organism_name': 'Example species', 'infraspecific_name': 'strain=ABC 1234'}
    output = tmpdir.mkdir('output')
    output.join('human_readable', 'refseq', 'bacteria', 'Example', 'species', 'ABC_1234').write(
        'foo', ensure=True)
    with pytest.raises(OSError):
        core.create_readable_dir(entry, 'refseq', 'bacteria', str(output))

示例#3

文件： test_core.py 项目： kblin/ncbi-genome-download

def test_create_readable_dir_virus(tmpdir):
    output = tmpdir.mkdir('output')
    entry = {'organism_name': 'OnlyOneString-1', 'infraspecific_name': 'strain=ABC 1234'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'OnlyOneString-1', 'ABC_1234')
    assert expected.check()
    assert ret == str(expected)

    entry = {'organism_name': 'Two strings', 'infraspecific_name': 'strain=ABC 1234'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'Two_strings', 'ABC_1234')
    assert expected.check()
    assert ret == str(expected)

    entry = {'organism_name': 'This is four strings', 'infraspecific_name': 'strain=ABC 1234'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'This_is_four_strings', 'ABC_1234')
    assert expected.check()
    assert ret == str(expected)

    entry = {'organism_name': 'This is four strings', 'infraspecific_name': '',
             'isolate': '', 'assembly_accession': 'ABC12345'}
    ret = core.create_readable_dir(entry, 'refseq', 'viral', str(output))

    expected = output.join('human_readable', 'refseq', 'viral', 'This_is_four_strings', 'ABC12345')
    assert expected.check()
    assert ret == str(expected)

示例#4

文件： test_core.py 项目： kblin/ncbi-genome-download

def test_create_readable_dir_isfile(tmpdir):
    entry = {'organism_name': 'Example species', 'infraspecific_name': 'strain=ABC 1234'}
    output = tmpdir.mkdir('output')
    output.join('human_readable', 'refseq', 'bacteria', 'Example', 'species', 'ABC_1234').write(
        'foo', ensure=True)
    with pytest.raises(OSError):
        core.create_readable_dir(entry, 'refseq', 'bacteria', str(output))

示例#5

文件： test_core.py 项目： mbourqui/ncbi-genome-download

def test_create_readable_dir_exists(tmpdir):
    entry = {'organism_name': 'Example species', 'infraspecific_name': 'strain=ABC 1234'}
    output = tmpdir.mkdir('output')
    expected = output.mkdir('human_readable').mkdir('refseq').mkdir('bacteria').mkdir(
        'Example').mkdir('species').mkdir('ABC_1234')
    ret = core.create_readable_dir(entry, 'refseq', 'bacteria', str(output))
    assert ret == str(expected)

示例#6

文件： test_core.py 项目： kblin/ncbi-genome-download

def test_create_readable_dir_exists(tmpdir):
    entry = {'organism_name': 'Example species', 'infraspecific_name': 'strain=ABC 1234'}
    output = tmpdir.mkdir('output')
    expected = output.mkdir('human_readable').mkdir('refseq').mkdir('bacteria').mkdir(
        'Example').mkdir('species').mkdir('ABC_1234')
    ret = core.create_readable_dir(entry, 'refseq', 'bacteria', str(output))
    assert ret == str(expected)