def test_ErrorConfigFileNotExists(tmpdir):
'''Test the class ErrorAnnotFileNotExists (error when a configuration file doesn't exist)'''
# This file is not created, just a tmp path
tmpfile = os.path.join(tmpdir.strpath, "tmpfile")
# Test instantiation
test_error = NCBImetaErrors.ErrorConfigFileNotExists(tmpfile)
# Test str representation (error message)
error_output = str(test_error)
error_expect = ("\n\nConfig file does not exist in the specified location." + "\n" + "Location specified: " + tmpfile)
assert error_output == error_expect
parser.add_argument('--version', action='version', version='%(prog)s v0.6.1')
# Retrieve user parameters
args = vars(parser.parse_args())
config_path = args['configPath']
flat_mode = args['flatMode']
#------------------------------------------------------------------------------#
# Error Catching #
#------------------------------------------------------------------------------#
# Check if configuration file exists
if not os.path.exists(config_path):
raise NCBImetaErrors.ErrorConfigFileNotExists(config_path)
# Load the YAML configuration file
with open(config_path) as config_file:
config_data = yaml.load(config_file, Loader=yaml.FullLoader)
if config_data is None:
raise NCBImetaErrors.ErrorConfigYAMLFormat(config_file)
# Retrieve configuration file values and error catching
#--- Output Directory ---#
try:
CONFIG_OUTPUT_DIR = config_data["OUTPUT_DIR"]
except KeyError:
raise NCBImetaErrors.ErrorConfigParameter("OUTPUT_DIR")
#--- User Email ---#
try:
