def __init__(
self,
*,
path: PurePosixPath,
location: Point5D = Point5D.zero(),
filesystem: JsonableFilesystem,
tile_shape: Optional[Shape5D] = None,
spatial_resolution: Optional[Tuple[int, int, int]] = None,
):
raw_data: "np.ndarray[Any, Any]" = skimage.io.imread(filesystem.openbin(path.as_posix())) # type: ignore
c_axiskeys_on_disk = "yxc"[: len(raw_data.shape)]
self._data = Array5D(raw_data, axiskeys=c_axiskeys_on_disk, location=location)
if tile_shape is None:
tile_shape = Shape5D.hypercube(256).to_interval5d().clamped(self._data.shape).shape
super().__init__(
c_axiskeys_on_disk=c_axiskeys_on_disk,
filesystem=filesystem,
path=path,
dtype=self._data.dtype,
interval=self._data.interval,
tile_shape=tile_shape,
spatial_resolution=spatial_resolution,
)
def __init__(
self,
*,
data: Array5D,
tile_shape: Optional[Shape5D] = None,
spatial_resolution: Optional[Tuple[int, int, int]] = None,
):
self._data = data
if tile_shape is None:
tile_shape = Shape5D.hypercube(256).to_interval5d().clamped(
self._data.shape).shape
super().__init__(
dtype=self._data.dtype,
tile_shape=tile_shape,
interval=self._data.interval,
spatial_resolution=spatial_resolution,
)