def test_align_func():
def my_func():
return [0, 1, 2, 3]
x = utils.align_func(tf.float32)(my_func)()
assert x.shape == (4, )
assert x.dtype == np.float32
assert np.allclose(x, [0, 1, 2, 3])
x = utils.align_func(np.int64)(my_func)()
assert x.dtype == np.int64
assert np.allclose(x, [[0, 1, 2, 3]])
def test_align_func():
def my_func():
return [0, 1, 2, 3]
x = utils.align_func((4,), tf.float32)(my_func)()
assert x.shape == (4,)
assert x.dtype == np.float32
assert np.allclose(x, [0, 1, 2, 3])
x = utils.align_func((2, 2), np.int64)(my_func)()
assert x.shape == (2, 2)
assert x.dtype == np.int64
assert np.allclose(x, [[0, 1], [2, 3]])
def merged_func(time, inputs): # pragma: no cover
outputs = []
offset = 0
for op in ops:
if op.output is None:
func = op.fn
else:
func = utils.align_func(op.output.shape,
self.output_dtype)(op.fn)
func_input = inputs[offset:offset + op.x.shape[0]]
offset += op.x.shape[0]
mini_out = []
for j in range(signals.minibatch_size):
if op.t is None:
func_out = func(func_input[..., j])
else:
func_out = func(time, func_input[..., j])
if op.output is None:
# just return time as a noop (since we need to
# return something)
func_out = time
mini_out += [func_out]
outputs += [np.stack(mini_out, axis=-1)]
return np.concatenate(outputs, axis=0)
def merged_func(time, inputs): # pragma: no cover
outputs = []
offset = 0
for op in ops:
if op.output is None:
func = op.fn
else:
func = utils.align_func(
op.output.shape, self.output_dtype)(op.fn)
func_input = inputs[offset:offset + op.x.shape[0]]
offset += op.x.shape[0]
mini_out = []
for j in range(signals.minibatch_size):
if op.t is None:
func_out = func(func_input[..., j])
else:
func_out = func(time, func_input[..., j])
if op.output is None:
# just return time as a noop (since we need to
# return something)
func_out = time
mini_out += [func_out]
outputs += [np.stack(mini_out, axis=-1)]
return np.concatenate(outputs, axis=0)
def build_post(self):
"""
Executes post-build processes for operators (after the graph has
been constructed and whenever Simulator is reset).
"""
rng = np.random.RandomState(self.seed)
# build input functions (we need to do this here, because in the case
# of processes these functions need to be be rebuilt on reset)
self.input_funcs = {}
for n, output in self.invariant_inputs.items():
if isinstance(output, np.ndarray):
self.input_funcs[n] = output
elif isinstance(output, Process):
state = output.make_state((n.size_in,), (n.size_out,), self.dt)
self.input_funcs[n] = [
output.make_step(
(n.size_in,),
(n.size_out,),
self.dt,
output.get_rng(rng),
state,
)
for _ in range(self.minibatch_size)
]
elif n.size_out > 0:
self.input_funcs[n] = [utils.align_func(self.dtype)(output)]
else:
# a node with no inputs and no outputs, but it can still
# have side effects
self.input_funcs[n] = [output]
# execute build_post on all the op builders
self.op_builder.build_post(self.signals)
def build_post(self, sess, rng):
"""
Executes post-build processes for operators (after the graph has
been constructed and session/variables initialized).
Note that unlike other build functions, this is called every time
the simulator is reset.
Parameters
----------
sess : ``tf.Session``
The TensorFlow session for the simulator
rng : :class:`~numpy:numpy.random.RandomState`
Seeded random number generator
"""
# build input functions (we need to do this here, because in the case
# of processes these functions depend on the rng, and need to be be
# rebuilt on reset)
self.input_funcs = {}
for n, output in self.invariant_inputs.items():
if isinstance(output, np.ndarray):
self.input_funcs[n] = output
elif isinstance(output, Process):
self.input_funcs[n] = [
output.make_step((n.size_in, ), (n.size_out, ), self.dt,
output.get_rng(rng))
for _ in range(self.minibatch_size)
]
elif n.size_out > 0:
self.input_funcs[n] = [
utils.align_func((n.size_out, ), self.dtype)(output)
]
else:
# a node with no inputs and no outputs, but it can still
# have side effects
self.input_funcs[n] = [output]
# call build_post on all the op builders
for ops, built_ops in self.op_builds.items():
built_ops.build_post(ops, self.signals, sess, rng)
def build_post(self, sess, rng):
"""
Executes post-build processes for operators (after the graph has
been constructed and session/variables initialized).
Note that unlike other build functions, this is called every time
the simulator is reset.
Parameters
----------
sess : ``tf.Session``
The TensorFlow session for the simulator
rng : `~numpy.random.RandomState`
Seeded random number generator
"""
# build input functions (we need to do this here, because in the case
# of processes these functions depend on the rng, and need to be be
# rebuilt on reset)
self.input_funcs = {}
for n, output in self.invariant_inputs.items():
if isinstance(output, np.ndarray):
self.input_funcs[n] = output
elif isinstance(output, Process):
self.input_funcs[n] = [
output.make_step(
(n.size_in,), (n.size_out,), self.dt,
output.get_rng(rng))
for _ in range(self.minibatch_size)]
elif n.size_out > 0:
self.input_funcs[n] = [
utils.align_func((n.size_out,), self.dtype)(output)]
else:
# a node with no inputs and no outputs, but it can still
# have side effects
self.input_funcs[n] = [output]
# execute post_build on all the op builders
self.op_builder.post_build(sess, rng)
def build_post(self, signals):
# generate state for each op
step_states = [
op.process.make_state(
op.input.shape if op.input is not None else (0, ),
op.output.shape,
signals.dt_val,
) for op in self.ops
]
# build all the states into combined array with shape
# (n_states, n_ops, *state_d)
combined_states = [[None for _ in self.ops]
for _ in range(len(self.ops[0].state))]
for i, op in enumerate(self.ops):
# note: we iterate over op.state so that the order is always based on that
# dict's order (which is what we used to set up self.state_data)
for j, name in enumerate(op.state):
combined_states[j][i] = step_states[i][name]
# combine op states, giving shape
# (n_states, n_ops * state_d[0], *state_d[1:])
# (keeping track of the offset of where each op's state lies in the
# combined array)
offsets = [[s.shape[0] for s in state] for state in combined_states]
offsets = np.cumsum(offsets, axis=-1)
self.step_states = [
np.concatenate(state, axis=0) for state in combined_states
]
# cast to appropriate dtype
for i, state in enumerate(self.state_data):
self.step_states[i] = self.step_states[i].astype(state.dtype)
# duplicate state for each minibatch, giving shape
# (n_states, minibatch_size, n_ops * state_d[0], *state_d[1:])
assert all(s.minibatched for op in self.ops for s in op.state.values())
for i, state in enumerate(self.step_states):
self.step_states[i] = np.tile(
state[None,
...], (signals.minibatch_size, ) + (1, ) * state.ndim)
# build the step functions
self.step_fs = [[None for _ in range(signals.minibatch_size)]
for _ in self.ops]
for i, op in enumerate(self.ops):
for j in range(signals.minibatch_size):
# pass each make_step function a view into the combined state
state = {}
for k, name in enumerate(op.state):
start = 0 if i == 0 else offsets[k][i - 1]
stop = offsets[k][i]
state[name] = self.step_states[k][j, start:stop]
assert np.allclose(state[name], step_states[i][name])
self.step_fs[i][j] = op.process.make_step(
op.input.shape if op.input is not None else (0, ),
op.output.shape,
signals.dt_val,
op.process.get_rng(self.config.rng),
state,
)
self.step_fs[i][j] = utils.align_func(self.output_data.dtype)(
self.step_fs[i][j])