Zebrafish MN NeuroMorpho.Org ID : NMO_09365 ''' from netpyne.support import morphology from netpyne import sim from neuron import h import matplotlib.pyplot as plt from mpl_toolkits import mplot3d import platform import neuron as nrn #load cell as mycell #def getmorph(self): myCell = morphology.Cell() morphology.load(filename=os.path.join(wdir, 'MN3_morphology.swc'), cell=myCell) #plot loaded cell fig = plt.figure() ax = plt.axes(projection='3d') morphology.shapeplot(h, ax, color='r') #get the sections from the cell secs = list(h.allsec()) secs_all = secs soma = [] axon = [] dend = [] #get the sections fro soma, axon and dend
sys.path.append('/Applications/NEURON-7.7/nrn/lib/python')
import os
wdir = os.getcwd()
from netpyne.support import morphology
from netpyne import sim
from neuron import h
import matplotlib.pyplot as plt
import matplotlib.cm
from mpl_toolkits import mplot3d
import platform
import neuron as nrn
#load cell as mycell
# def getmorph(self):
myCell_1 = morphology.Cell()
morphology.load(filename=os.path.join(wdir, 'MN1_morphology.swc'),
cell=myCell_1)
cell1_secs = list(h.allsec())
lenght_1 = len(cell1_secs)
myCell_2 = morphology.Cell()
morphology.load(filename=os.path.join(wdir, 'MN2_morphology.swc'),
cell=myCell_2)
cell2_secs = list(h.allsec())
del cell2_secs[0:lenght_1]
lenght_2 = len(cell2_secs)