def test_prim_mst_edges_specify_weight(self):
G=nx.Graph()
G.add_edge(1,2,weight=1,color='red',distance=7)
G.add_edge(1,3,weight=30,color='blue',distance=1)
G.add_edge(2,3,weight=1,color='green',distance=1)
G.add_node(13,color='purple')
G.graph['foo']='bar'
T=nx.prim_mst(G)
assert_equal(sorted(T.nodes()),[1,2,3,13])
assert_equal(sorted(T.edges()),[(1,2),(2,3)])
T=nx.prim_mst(G,weight='distance')
assert_equal(sorted(T.edges()),[(1,3),(2,3)])
assert_equal(sorted(T.nodes()),[1,2,3,13])
def test_prim_mst_edges_specify_weight(self):
G = nx.Graph()
G.add_edge(1, 2, weight=1, color='red', distance=7)
G.add_edge(1, 3, weight=30, color='blue', distance=1)
G.add_edge(2, 3, weight=1, color='green', distance=1)
G.add_node(13, color='purple')
G.graph['foo'] = 'bar'
T = nx.prim_mst(G)
assert_equal(sorted(T.nodes()), [1, 2, 3, 13])
assert_equal(sorted(T.edges()), [(1, 2), (2, 3)])
T = nx.prim_mst(G, weight='distance')
assert_equal(sorted(T.edges()), [(1, 3), (2, 3)])
assert_equal(sorted(T.nodes()), [1, 2, 3, 13])
def test_prim_mst_disconnected(self):
G=nx.Graph()
G.add_path([1,2])
G.add_path([10,20])
T=nx.prim_mst(G)
assert_equal(sorted(T.edges()),[(1, 2), (20, 10)])
assert_equal(sorted(T.nodes()),[1, 2, 10, 20])
def test_prim_mst_disconnected(self):
G = nx.Graph()
G.add_path([1, 2])
G.add_path([10, 20])
T = nx.prim_mst(G)
assert_equal(sorted(T.edges()), [(1, 2), (20, 10)])
assert_equal(sorted(T.nodes()), [1, 2, 10, 20])
def test_prim_mst_attributes(self):
G=nx.Graph()
G.add_edge(1,2,weight=1,color='red',distance=7)
G.add_edge(2,3,weight=1,color='green',distance=2)
G.add_edge(1,3,weight=10,color='blue',distance=1)
G.add_node(13,color='purple')
G.graph['foo']='bar'
T=nx.prim_mst(G)
assert_equal(T.graph,G.graph)
assert_equal(T.node[13],G.node[13])
assert_equal(T.edge[1][2],G.edge[1][2])
def test_prim_mst_attributes(self):
G = nx.Graph()
G.add_edge(1, 2, weight=1, color='red', distance=7)
G.add_edge(2, 3, weight=1, color='green', distance=2)
G.add_edge(1, 3, weight=10, color='blue', distance=1)
G.add_node(13, color='purple')
G.graph['foo'] = 'bar'
T = nx.prim_mst(G)
assert_equal(T.graph, G.graph)
assert_equal(T.node[13], G.node[13])
assert_equal(T.edge[1][2], G.edge[1][2])
def test_prim_mst(self):
T=nx.prim_mst(self.G)
assert_equal(T.edges(data=True),self.tree_edgelist)
def test_prim_mst_isolate(self):
G=nx.Graph()
G.add_nodes_from([1,2])
T=nx.prim_mst(G)
assert_equal(sorted(T.nodes()),[1, 2])
assert_equal(sorted(T.edges()),[])
def extract_mst(self, algorithm):
if algorithm is TSP.MST.PRIM:
return self._extract_prim_mst()
elif algorithm is TSP.MST.NETWORKX:
return nx.prim_mst(self.graph)
def run():
t0 = time.time()
numsolved = 0
nodeslist = []
distlist = []
timelist = []
while ((time.time() - t0) < 600):
t0 = time.time()
for i in range(100): #CHANGE TO 100
temptime = time.time()
fileobj = open('test' + str(i) + '.txt',
'r') #CHANGE TEST0 TO A VAR, SO IT CYCLES ALL FILES
if ((time.time() - t0) > 600):
break
#fileobj=open('test78.txt','r')
numcities = fileobj.readline()
cities = []
closed = []
notclosed = []
dist = 0
nodes = 0
#this reads the files, turns all the cities into nodes, and puts them in the notclosed list
for d in range(int(float(numcities))):
tmp = fileobj.readline()
firstspace = tmp.index(" ")
secondspace = tmp.index(' ', firstspace + 1)
cities.append((tmp[firstspace + 1:secondspace],
tmp[secondspace + 1:len(tmp) - 1]))
tmpNode = Node()
tmpNode.x = float(tmp[firstspace + 1:secondspace])
tmpNode.y = float(tmp[secondspace + 1:len(tmp) - 1])
tmpNode.num = float(tmp[:firstspace])
nodes += 1
notclosed.append(tmpNode)
closed.append(notclosed[0])
notclosed.remove(closed[0])
start = closed[0]
curr = start
tmpcity = closed[0]
distances = []
if ((time.time() - t0) > 600):
break
while (notclosed and (time.time() - t0 < 600)):
#while(notclosed):
maxdist = 999999
maxnode = None
for a in notclosed: #iterates through all the nodes, to see which one to add next
graph = nx.Graph()
hn = 0
hn = dist + hn + findDistance(a, curr)
for g in range(len(notclosed)):
if (notclosed[g] != a):
distances.append(findDistance(a, notclosed[g]))
for e in range(len(notclosed) + 1):
if (g != len(notclosed)):
if (e == len(notclosed)):
if (notclosed[g].x != a.x
and notclosed[g].y != a.y):
dist1 = findDistance(
notclosed[g], start)
graph.add_edge(g, 'c', weight=dist1)
nodes += 1
if ((time.time() - t0) > 600):
break
else:
if ((notclosed[g].x != a.x
and notclosed[g].y != a.y)
and (notclosed[e].x != a.x
and notclosed[e].y != a.y)):
dist1 = findDistance(
notclosed[g], notclosed[e])
graph.add_edge(g, e, weight=dist1)
nodes += 1
if ((time.time() - t0) > 600):
break
adddist = 0
for c in notclosed:
if (a != c):
adddist += findDistance(c, start)
hn += adddist
mst = nx.prim_mst(graph) #changed tree to edges
for node in mst.edges(data=True):
hn += node[2][
'weight'] #adds up the distances from the mst
hn += findDistance(a, start) + min(
distances
) #adds the distance from the a node to start node
if (hn < maxdist):
maxdist = hn
maxnode = a
if ((time.time() - t0) > 600):
break
closed.append(maxnode)
notclosed.remove(maxnode)
dist += findDistance(maxnode, curr)
curr = maxnode
distlist.append(dist)
nodeslist.append(nodes)
print(time.time() - temptime)
print("iter: " + str(i) + " dist: " + str(dist))
timelist.append(time.time() - temptime)
numsolved += 1
print(time.time() - t0)
print(numsolved)
print(dist)
counter1 = 0
counter2 = 0
counter3 = 0
counter4 = 0
nodesavg1 = 0
nodesavg2 = 0
nodesavg3 = 0
nodesavg4 = 0
timeavg1 = 0
timeavg2 = 0
timeavg3 = 0
timeavg4 = 0
distavg1 = 0
distavg2 = 0
distavg3 = 0
distavg4 = 0
for i in range(numsolved):
if (i < 25):
nodesavg1 += nodeslist[i]
timeavg1 += timelist[i]
distavg1 += distlist[i]
counter1 += 1
elif (i < 50):
nodesavg2 += nodeslist[i]
timeavg2 += timelist[i]
distavg2 += distlist[i]
counter2 += 1
elif (i < 75):
nodesavg3 += nodeslist[i]
timeavg3 += timelist[i]
distavg3 += distlist[i]
counter3 += 1
else:
nodesavg4 += nodeslist[i]
timeavg4 += timelist[i]
distavg4 += distlist[i]
counter4 += 1
print("avgnode1: " + str(nodesavg1 / counter1) + " avgtime1: " +
str(timeavg1 / counter1) + " avgdist1: " + str(distavg1 / counter1))
print("avgnode2: " + str(nodesavg2 / counter2) + " avgtime2: " +
str(timeavg2 / counter2) + " avgdist2: " + str(distavg2 / counter2))
print("avgnode3: " + str(nodesavg3 / counter3) + " avgtime3: " +
str(timeavg3 / counter3) + " avgdist3: " + str(distavg3 / counter3))
print("avgnode4: " + str(nodesavg4 / counter4) + " avgtime4: " +
str(timeavg4 / counter4) + " avgdist4: " + str(distavg4 / counter4))
net.show()
net.algorithms = (MegaMerger,)
write_pickle(net, 'RandomSAlg.tar.gz')
#write_pickle(net, 'WorstCaseSAlg.tar.gz')
##s ovom mrezom pokretati GUI simulator
g = Graph()
g.adj=net.adj
#Uses Kruskal’s algorithm.
#If the graph edges do not have a weight attribute
#a default weight of 1 will be used.
#test_graph = minimum_spanning_tree(net)
test_graph=prim_mst(net)
test_net.adj=test_graph.adj
test_net.show()
test_sum= test_net.size(weight='weight')
#sim = Simulation(net)
#sim.run()
exclude = list()
exclude.append('Neighbors')
print "banana"
print("banana")
for node in net.nodes():
def test_prim_mst(self):
T = nx.prim_mst(self.G)
assert_equal(T.edges(data=True), self.tree_edgelist)
def test_prim_mst_isolate(self):
G = nx.Graph()
G.add_nodes_from([1, 2])
T = nx.prim_mst(G)
assert_equal(sorted(T.nodes()), [1, 2])
assert_equal(sorted(T.edges()), [])
print "|Original Algorithm|" print "Nodes of MST is: ",mst.nodes() print "Edges of MST is: ", print_edges(mst) print "Total Cost is: ",total_cost print "Time Elapsed (in seconds): ", time_consumed print "Number of Iterations: ",qty_of_iterations print "" #run the networkx algorithm time_consumed = 0 start_time = 0 start_time = timeit.default_timer() T = nx.prim_mst(G) time_consumed = timeit.default_timer() - start_time print "|Networkx Algorithm|" print "Nodes of MST is: ",T.nodes() print "Edges of MST is: " print_edges(T) total_cost = 0 for edge in T.edges(data='weight'): total_cost += getWeight(edge) print "Total Cost is: ",total_cost print "Time Elapsed (in seconds): ", time_consumed print ""
def isum(wlist):
ctr = 0
for weight in wlist:
ctr+= (0 if weight == sys.maxint else weight)
return ctr
for line in fp:
adj = map(convert, line.rstrip('\r\n').split(','))
for j in range(nov):
G.add_edge(i,j,weight=adj[j])
i+=1
# total_weight = sum([weight for edge, weight, in nx.get_edge_attributes(G, 'weight')])
weight_list = (G[a][b]['weight'] for a,b in nx.get_edge_attributes(G, 'weight'))
total_weight = isum(weight_list)
print total_weight
T =nx.prim_mst(G)
new_weight_list = (T[a][b]['weight'] for a,b in nx.get_edge_attributes(T, 'weight'))
new_weight = isum(new_weight_list)
print new_weight
print "Savings %ld" % (total_weight - new_weight)
#set root's key to zero
def _generate_spanning_graph(self):
return nx.prim_mst(self.complete_graph)
def extract_mst(self, algorithm):
if algorithm is MSTGrouping.MST.PRIM:
return self._extract_prim_mst()
elif algorithm is MSTGrouping.MST.NETWORKX:
return nx.prim_mst(self.graph)
def _generate_spanning_graph(self):
return nx.prim_mst(self.complete_graph)
src = random.choice(network.nodes())
dst = random.choice(network.nodes())
paths.append((src, dst))
for path in paths:
src, dst = path
print("\nSource: ", src, " Destination: ", dst)
dijkstra_shortest_paths = nx.single_source_dijkstra_path(network.copy(), src, weight='distance')
dijkstra_shortest_path = dijkstra_shortest_paths[dst]
dsp_edges = list(zip(dijkstra_shortest_path[0:], dijkstra_shortest_path[1:]))
print("\n\tDijkstra\n\t\tPath: ", dijkstra_shortest_path)
dijkstra_throughput = select_channels(network, dsp_edges)
print("\t\tThroughput = ", dijkstra_throughput)
dijkstra_greedy_throughput = select_channels_greedy(network, dsp_edges)
print("\t\tThroughput Greedy = ", dijkstra_greedy_throughput)
prim_tree = nx.prim_mst(network, weight='bottleneck_weight')
prim_path = nx.shortest_path(prim_tree, src, dst)
prim_edges = list(zip(prim_path[0:], prim_path[1:]))
print("\tPrim\n\t\tPath: ", prim_path)
prim_throughput = select_channels(network, prim_edges)
print("\t\tThroughput = ", prim_throughput)
prim_greedy_throughput = select_channels_greedy(network, prim_edges)
print("\t\tThroughput Greedy = ", prim_greedy_throughput)
rcs_path = rcs_path(network, src, dst)
print("\tRCS")
if rcs_path is not None:
print("\t\tPath: ", list(vertices_for_path(rcs_path.path)))
rcs_throughput = select_channels(network, rcs_path.path)
print("\t\tThroughput: ", rcs_throughput)
rcs_greedy_throughput = select_channels_greedy(network, rcs_path.path)
print("\t\tThroughput Greedy: ", rcs_greedy_throughput)