def get_flat_neurites(neuron, tol=0.1, method='ratio'):
'''Check if a neuron has neurites that are flat within a tolerance
Argument:
neuron : The neuron object to test
tol : the tolerance or the ratio
method : way of determining flatness, 'tolerance', 'ratio'
Returns:
Bool list corresponding to the flatness check for each neurite
in neuron neurites with respect to the given criteria
'''
return [n for n in neuron.neurites if is_flat(n, tol, method)]
def test_is_flat(): neu_tree = load_neuron(os.path.join(SWC_PATH, 'Neuron.swc')).neurites[0] nt.assert_false(is_flat(neu_tree, 1e-6, method='tolerance')) nt.assert_false(is_flat(neu_tree, 0.1, method='ratio'))
def test_is_flat():
neu_tree = load_neuron(os.path.join(SWC_PATH, 'Neuron.swc')).neurites[0]
nt.assert_false(mt.is_flat(neu_tree, 1e-6, method='tolerance'))
nt.assert_false(mt.is_flat(neu_tree, 0.1, method='ratio'))
def test_is_flat():
neu_tree = load_neuron(Path(SWC_PATH, 'Neuron.swc'))
assert not mt.is_flat(neu_tree.neurites[0], 1e-6, method='tolerance')
assert not mt.is_flat(neu_tree.neurites[0], 0.1, method='ratio')
