Python has_all_nonzero_neurite_radii示例

示例#1

def test_has_all_nonzero_neurite_radii_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn)
    nt.ok_(ids.status)

    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn, threshold=0.25)
    nt.assert_equal(len(ids.info), 122)

示例#2

文件： test_neuron_checks.py 项目： jdcourcol/NeuroM

def test_has_all_nonzero_neurite_radii_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn)
    nt.ok_(ids.status)

    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn, threshold=0.25)
    nt.assert_equal(len(ids.info), 122)

示例#3

def test_has_all_nonzero_neurite_radii_threshold():
    nrn = NEURONS['Neuron.swc']

    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn)
    assert ids.status

    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn, threshold=0.25)
    assert len(ids.info) == 122

示例#4

文件： test_neuron_checks.py 项目： jdcourcol/NeuroM

def test_nonzero_neurite_radii_bad_data():
    nrn = NEURONS['Neuron_zero_radius.swc']
    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn)
    nt.assert_equal(ids.info, [(20, 10), (21, 0),
                               (22, 0), (22, 6),
                               (26, 1), (31, 9),
                               (50, 7)])

示例#5

def test_nonzero_neurite_radii_bad_data():
    nrn = NEURONS['Neuron_zero_radius.swc']
    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn)
    nt.assert_equal(ids.info, [(20, 10), (21, 0),
                               (22, 0), (22, 6),
                               (26, 1), (31, 9),
                               (50, 7)])

示例#6

文件： test_neuron_checks.py 项目： jdcourcol/NeuroM

def test_nonzero_neurite_radii_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             'Neuron_2_branch.h5',
             ]

    for n in _pick(files):
        ids = nrn_chk.has_all_nonzero_neurite_radii(n)
        nt.ok_(len(ids.info) == 0)

示例#7

def test_nonzero_neurite_radii_good_data():
    files = ['Neuron.swc',
             'Single_apical.swc',
             'Single_basal.swc',
             'Single_axon.swc',
             'Neuron_2_branch.h5',
             ]

    for n in _pick(files):
        ids = nrn_chk.has_all_nonzero_neurite_radii(n)
        assert len(ids.info) == 0

示例#8

文件： benchmarks.py 项目： BlueBrain/NeuroM

 def time_has_all_nonzero_neurite_radii(self):
     nc.has_all_nonzero_neurite_radii(self.neuron, threshold=0.0)

示例#9

文件： benchmarks.py 项目： yamagatm/NeuroM

 def time_has_all_nonzero_neurite_radii(self):
     nc.has_all_nonzero_neurite_radii(self.neuron, threshold=0.0)

示例#10

def test_nonzero_neurite_radii_bad_data():
    nrn = NEURONS['Neuron_zero_radius.swc']
    ids = nrn_chk.has_all_nonzero_neurite_radii(nrn, threshold=0.7)
    assert ids.info == [(0, 2)]