def test_has_sequential_ids_bad_data(self):
f = os.path.join(SWC_PATH, 'Neuron_missing_ids.swc')
ok = chk.has_sequential_ids(self.load_data(f))
nt.ok_(not ok)
nt.assert_items_equal(ok.info, [6, 217, 428, 639])
def test_has_sequential_ids_bad_data(self):
f = Path(SWC_PATH, 'Neuron_missing_ids.swc')
ok = chk.has_sequential_ids(self.load_data(f))
nt.ok_(not ok)
nt.eq_(list(ok.info), [6, 217, 428, 639])
def test_has_sequential_ids_good_data(self):
files = [
Path(SWC_PATH, f) for f in [
'Neuron.swc', 'Single_apical_no_soma.swc', 'Single_apical.swc',
'Single_basal.swc', 'Single_axon.swc',
'Neuron_zero_radius.swc', 'sequential_trunk_off_0_16pt.swc',
'sequential_trunk_off_1_16pt.swc',
'sequential_trunk_off_42_16pt.swc',
'Neuron_no_missing_ids_no_zero_segs.swc'
]
]
for f in files:
ok = chk.has_sequential_ids(self.load_data(f))
nt.ok_(ok)
nt.ok_(len(ok.info) == 0)
def test_has_sequential_ids_good_data(self):
files = [os.path.join(SWC_PATH, f)
for f in ['Neuron.swc',
'Single_apical_no_soma.swc',
'Single_apical.swc',
'Single_basal.swc',
'Single_axon.swc',
'Neuron_zero_radius.swc',
'sequential_trunk_off_0_16pt.swc',
'sequential_trunk_off_1_16pt.swc',
'sequential_trunk_off_42_16pt.swc',
'Neuron_no_missing_ids_no_zero_segs.swc']
]
for f in files:
ok = chk.has_sequential_ids(self.load_data(f))
nt.ok_(ok)
nt.ok_(len(ok.info) == 0)
def time_has_sequential_ids(self):
sc.has_sequential_ids(self.data_wrapper)
def time_has_sequential_ids(self):
sc.has_sequential_ids(self.data_wrapper)
