Python local_bifurcation_angles示例

示例#1

文件： test_feature_compat.py 项目： reddqian/NeuroM

    def test_get_local_bifurcation_angles(self):
        _close(_nrt.local_bifurcation_angles(self.sec_nrn),
               get('local_bifurcation_angles', self.ref_nrn))

        for t in NeuriteType:
            _close(_nrt.local_bifurcation_angles(self.sec_nrn, neurite_type=t),
                   get('local_bifurcation_angles', self.ref_nrn, neurite_type=t))

        ba = [_bf.local_bifurcation_angle(b)
              for b in i_chain2(self.sec_nrn_trees, iterator_type=Tree.ibifurcation_point)]

        _close(ba, get('local_bifurcation_angles', self.ref_nrn))

示例#2

文件： test_feature_compat.py 项目： jdcourcol/NeuroM

    def test_get_local_bifurcation_angles(self):
        _close(_nrt.local_bifurcation_angles(self.sec_nrn),
               get('local_bifurcation_angles', self.ref_nrn))

        for t in NeuriteType:
            _close(_nrt.local_bifurcation_angles(self.sec_nrn, neurite_type=t),
                   get('local_bifurcation_angles', self.ref_nrn, neurite_type=t))

        ba = [_bf.local_bifurcation_angle(b)
              for b in i_chain2(self.sec_nrn_trees, iterator_type=Tree.ibifurcation_point)]

        _close(ba, get('local_bifurcation_angles', self.ref_nrn))

示例#3

def test_local_bifurcation_angles():
    ref_local_bifangles = list(nf.local_bifurcation_angles(NEURON))

    local_bifangles = fst_get('local_bifurcation_angles', NEURON)
    nt.eq_(len(local_bifangles), 40)
    assert_allclose(local_bifangles, ref_local_bifangles)
    local_bifangles = fst_get('local_bifurcation_angles',
                              NEURON,
                              neurite_type=NeuriteType.all)
    nt.eq_(len(local_bifangles), 40)
    assert_allclose(local_bifangles, ref_local_bifangles)

    s = fst_get('local_bifurcation_angles',
                NEURON,
                neurite_type=NeuriteType.axon)
    nt.eq_(len(s), 10)

    s = fst_get('local_bifurcation_angles',
                NEURON,
                neurite_type=NeuriteType.basal_dendrite)
    nt.eq_(len(s), 20)

    s = fst_get('local_bifurcation_angles',
                NEURON,
                neurite_type=NeuriteType.apical_dendrite)
    nt.eq_(len(s), 10)

示例#4

文件： test_get_features.py 项目： jdcourcol/NeuroM

def test_local_bifurcation_angles():
    ref_local_bifangles = list(nf.local_bifurcation_angles(NEURON))

    local_bifangles = fst_get('local_bifurcation_angles', NEURON)
    nt.eq_(len(local_bifangles), 40)
    assert_allclose(local_bifangles, ref_local_bifangles)
    local_bifangles = fst_get('local_bifurcation_angles', NEURON, neurite_type=NeuriteType.all)
    nt.eq_(len(local_bifangles), 40)
    assert_allclose(local_bifangles, ref_local_bifangles)

    s = fst_get('local_bifurcation_angles', NEURON, neurite_type=NeuriteType.axon)
    nt.eq_(len(s), 10)

    s = fst_get('local_bifurcation_angles', NEURON, neurite_type=NeuriteType.basal_dendrite)
    nt.eq_(len(s), 20)

    s = fst_get('local_bifurcation_angles', NEURON, neurite_type=NeuriteType.apical_dendrite)
    nt.eq_(len(s), 10)

示例#5

文件： test_neuritefunc.py 项目： nagyistge/NeuroM

def test_local_bifurcation_angles():
    local_bif_angles = list(_nf.local_bifurcation_angles(SIMPLE))
    assert_allclose(local_bif_angles, (pi, pi))

示例#6

文件： test_neuritefunc.py 项目： jdcourcol/NeuroM

def test_local_bifurcation_angles():
    local_bif_angles = list(_nf.local_bifurcation_angles(SIMPLE))
    assert_allclose(local_bif_angles,
                    (pi, pi))