def dump_data():
dir_name = 'nextgisbio/initial_data/csv/' + time.strftime("%Y_%m_%d_%H_%M_%S")
if not os.path.exists(dir_name):
os.makedirs(dir_name)
else:
raise Exception('Directory for exported csv files already exists')
get_path_name = lambda name: os.path.join(dir_name, name)
with transaction.manager:
Annotation.export_to_file(get_path_name('annotation.csv'))
Cards.export_to_file(get_path_name('cards.csv'))
Person.export_to_file(get_path_name('person.csv'))
Taxa_scheme.export_to_file(get_path_name('taxa_scheme.csv'))
Museum.export_to_file(get_path_name('museum.csv'))
Coord_type.export_to_file(get_path_name('coord_type.csv'))
Anthr_press.export_to_file(get_path_name('anthr_press.csv'))
Vitality.export_to_file(get_path_name('vitality.csv'))
Abundance.export_to_file(get_path_name('abundance.csv'))
Footprint.export_to_file(get_path_name('footprint.csv'))
Pheno.export_to_file(get_path_name('pheno.csv'))
Inforesources.export_to_file(get_path_name('inforesources.csv'))
Legend.export_to_file(get_path_name('legend.csv'))
Area_type.export_to_file(get_path_name('area_type.csv'))
Key_area.export_to_file(get_path_name('key_area.csv'))
RedBook.export_to_file(get_path_name('redbooks.csv'))
User.export_to_file(get_path_name('user.csv'))
Squares.export_to_file(get_path_name('square_karea_association.csv'))
Taxon.export_to_file(get_path_name('taxon.csv'))
Synonym.export_to_file(get_path_name('synonym.csv'))
Images.export_to_file(get_path_name('images.csv'))
CardsImages.export_to_file(get_path_name('cards_images.csv'))
return dir_name
def new_anlist(request):
new_data = dict(request.POST)
success = True
try:
import transaction
with transaction.manager:
dbsession = DBSession()
anlist = Annotation()
for k,v in new_data.items():
if v == '': v = None
if hasattr(anlist, k): setattr(anlist, k, v)
dbsession.add(anlist)
except:
success = False
return {'success': success}
def anns_download(request):
format = id=request.matchdict['format']
if not format in ['csv', 'shp']:
return Response()
try:
#taxon_list -- список, аналогичный querystring в view.cards.points_text
# (taxon_id1,taxon_id2)
taxons = request.params['taxon_list']
if taxons == 'root':
taxon_list = None
elif taxons != '':
taxons = urllib.unquote(taxons)
taxons = taxons.split(',')
taxons = [t.split('_') for t in taxons]
taxon_list = [id for (t,id) in taxons]
else:
taxon_list = None
except KeyError:
taxon_list = None
anns = Annotation.as_join_list(taxon_list)
if format == 'csv':
fname = tempfile.mktemp()
try:
file = open(fname, 'w')
writer = csv.writer(file, delimiter = '\t')
# Сохраним в файл
for ann in anns:
x = [try_encode(v) for v in ann]
writer.writerow(x)
file.close()
# Наверное, стоит архивировать перед передачей. Тут без архивации.
file = open(fname, 'r')
data = file.read()
resname = 'annotations.csv'
finally: # в любом случае удаляем файл
os.remove(fname)
elif format == 'shp':
print 'Not implemented'
return Response(content_type="application/octet-stream",
content_disposition="attachment; filename=%s" % (resname, ), body=data)
def anns_download(request):
format = id=request.matchdict['format']
if not format in ['csv', 'shp']:
return Response()
try:
#taxon_list -- список, аналогичный querystring в view.cards.points_text
# (taxon_id1,taxon_id2)
taxons = request.params['taxon_list']
if taxons == 'root':
taxon_list = None
elif taxons != '':
taxons = urllib.unquote(taxons)
taxons = taxons.split(',')
taxons = [t.split('_') for t in taxons]
taxon_list = [id for (t,id) in taxons]
else:
taxon_list = None
except KeyError:
taxon_list = None
anns = Annotation.as_join_list(taxon_list)
if format == 'csv':
fname = tempfile.mktemp()
try:
file = open(fname, 'w')
writer = csv.writer(file, delimiter = '\t')
# Сохраним в файл
for ann in anns:
x = [try_encode(v) for v in ann]
writer.writerow(x)
file.close()
# Наверное, стоит архивировать перед передачей. Тут без архивации.
file = open(fname, 'r')
data = file.read()
resname = 'annotations.csv'
finally: # в любом случае удаляем файл
os.remove(fname)
elif format == 'shp':
print 'Not implemented'
return Response(content_type="application/octet-stream",
content_disposition="attachment; filename=%s" % (resname, ), body=data)
def main(argv=sys.argv):
if len(argv) != 2 and len(argv) != 3:
usage(argv)
config_uri = argv[1]
setup_logging(config_uri)
settings = get_appsettings(config_uri)
engine = engine_from_config(settings, 'sqlalchemy.')
DBSession.configure(bind=engine)
md5_pass = False
if len(argv) == 3 and argv[2] == '--md5-pass':
md5_pass = True
Base.metadata.drop_all(engine)
Base.metadata.create_all(engine)
# Заполним таблицы данными:
# Таксоны
taxons_file = 'nextgisbio/initial_data/csv/taxon.csv'
Taxon.add_from_file(taxons_file)
synonym_file = 'nextgisbio/initial_data/csv/synonym.csv'
Synonym.add_from_file(synonym_file)
# Справочники
person_file = 'nextgisbio/initial_data/csv/person.csv'
Person.add_from_file(person_file)
taxa_file = 'nextgisbio/initial_data/csv/taxa_scheme.csv'
Taxa_scheme.add_from_file(taxa_file)
museum_file = 'nextgisbio/initial_data/csv/museum.csv'
Museum.add_from_file(museum_file)
coord_type_file = 'nextgisbio/initial_data/csv/coord_type.csv'
Coord_type.add_from_file(coord_type_file)
ant_file = 'nextgisbio/initial_data/csv/anthr_press.csv'
Anthr_press.add_from_file(ant_file)
vital_file = 'nextgisbio/initial_data/csv/vitality.csv'
Vitality.add_from_file(vital_file)
abundance_file = 'nextgisbio/initial_data/csv/abundance.csv'
Abundance.add_from_file(abundance_file)
footprint_file = 'nextgisbio/initial_data/csv/footprint.csv'
Footprint.add_from_file(footprint_file)
pheno_file = 'nextgisbio/initial_data/csv/pheno.csv'
Pheno.add_from_file(pheno_file)
infores_file = 'nextgisbio/initial_data/csv/inforesources.csv'
Inforesources.add_from_file(infores_file)
area_type_file = 'nextgisbio/initial_data/csv/area_type.csv'
Area_type.add_from_file(area_type_file)
legend_file = 'nextgisbio/initial_data/csv/legend.csv'
Legend.add_from_file(legend_file)
key_area_file = 'nextgisbio/initial_data/csv/key_area.csv'
Key_area.add_from_file(key_area_file)
# Нужно добавить шейпы и заполнить данными таблицу
# связей (square_keyarea_association) многие-ко-многим между Squares и Key_area
shp_file = 'nextgisbio/initial_data/shp/key_areas_25km.shp'
association_file = 'nextgisbio/initial_data/csv/square_karea_association.csv'
Squares.add_from_file(association_file, shp_file)
# Карточки и аннотации
cards_file = 'nextgisbio/initial_data/csv/cards.csv'
Cards.add_from_file(cards_file)
ann_file = 'nextgisbio/initial_data/csv/annotation.csv'
Annotation.add_from_file(ann_file)
# Пользователи
users_file = 'nextgisbio/initial_data/csv/user.csv'
User.add_from_file(users_file, md5_pass)
red_books_csv = 'nextgisbio/initial_data/csv/redbooks.csv'
RedBook.import_from_csv(red_books_csv)
images_csv = 'nextgisbio/initial_data/csv/images.csv'
Images.import_from_csv(images_csv)
cards_images_csv = 'nextgisbio/initial_data/csv/cards_images.csv'
CardsImages.import_from_csv(cards_images_csv)